7AOIXB

Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
666
structure length
614
Chain Sequence
VPQQLKAYGGTFSRSVGERSNHLVSDVVLQSLSPSSTHNSPLLSKNIKTKTVTSFEDMPLYPELRSALRQLRITTPSPIQQSAVEVIMQRKDTVVAAPHGEGKTLAYLLPLYQNMIKDRDVYKIPLRERRPRMILLAPTRELIAQLHHVCSVLGEATGLHAISFTSRKRANHRLSRLLKQQLVDVMIMDPKIVLRLIRARRVFLDDLRYVAVDEADGMLSSQHDHDAVHLLMKVQKRVMFKHLWPVQTQTVFATAFITRKLEFVVGKKYPDAVTCIRRQRMHRPPGTLRHRFLPVEREREKMDTLQHLLKKHGNRPREILTDIEEEQAYSKPHYLSGSLEELVELDEMKERVRHALEGVRPVHWGHLTTVAAPFTCHVPRTVFADGKRCIIFTRGIDCATAVYHRLRGCGYTCSLLHAALPAAVRRRMFADFASGRTNILCSTDVAARGLDLHVDFVVNFDMPTNALTYLSRAGRTARQGRLGQVYSLYTKRQGVIVSAVRAFLQKQLPLEGISNWKRHMMEPRYAEWRTHKLNAIARSYVSLITQKTIPAHLERTYLRHNATWRPLFHPQTTGVHGGVPPRQQQRVMDAITWKAVCFRRGLLARRKGGRAKFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords bL28m
publication title Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit
rcsb
total genus 183
structure length 614
sequence length 666
ec nomenclature
pdb deposition date 2020-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
XB PF00270 DEAD DEAD/DEAH box helicase
XB PF00271 Helicase_C Helicase conserved C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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