7B4OAAA

A bacteroidetes bacterium cuzn-superoxide dismutase with znzn metalation
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
150
structure length
150
Chain Sequence
GKTQKAVCVIYPTQDYKVTGVITFTKSDDGVKVVADLNGLSPGKHGFHIHECGDCSASDGTSAGGHFNPEEKSHGAPMDMSRHIGDLGNITADENGKAHLEYIDKMIVFEGEHSIIGRSMIVHKNEDDLKTQPTGNAGARVACGVIGIGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Superoxide dismutase [Cu-Zn]
publication title Bacterial evolutionary precursors of eukaryotic copper-zinc superoxide dismutases.
pubmed doi rcsb
source organism Bacteroidetes bacterium gwa2_30_7
total genus 35
structure length 150
sequence length 150
chains with identical sequence BBB, CCC, DDD
ec nomenclature ec 1.15.1.1: Superoxide dismutase.
pdb deposition date 2020-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AAA PF00080 Sod_Cu Copper/zinc superoxide dismutase (SODC)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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