7B70B

Trappcore plus c8 (355-596) and c11 (1-718) from minitrappiii
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
151
structure length
151
Chain Sequence
SEEILFDCLHAEIVNYCLDSNKEHDLATLEYIGFTTGYRLIERLTREVSRFKDELETMKFICTDFWMLIYKKQVDNLRTNNHGMYVVQDKAFRFLTRISPGTKQLEHAPKFVAFTCGLVRGALSNLGINSTVTAEVQSIPACKFHIEVNRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Exocytosis
molecule keywords Trafficking protein particle complex subunit
publication title Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1
doi rcsb
source organism Drosophila melanogaster
total genus 26
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2020-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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