7BQQA

Solution nmr structure of fold-z gogy; de novo designed protein with an asymmetric all-alpha topology
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
130
structure length
130
Chain Sequence
GDERKLEEVTEEMRKMAENMDGQDPEKVKEIVRRALQQMANDNPEVSEQLRELAKRKGTSPSEVIKDLAEQVWRAMERAREGDKDTARELIRKFADDLGISPEQVKKFIKIMREVQRKEDGSLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords Gogy
publication title Design of Globin-like complicated all-alpha folds
rcsb
source organism Synthetic construct
total genus 49
structure length 130
sequence length 130
ec nomenclature
pdb deposition date 2020-03-25
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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