7BTBo

Cryo-em structure of pre-60s ribosome from saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 angstroms resolution(state r2)
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
129
structure length
129
Chain Sequence
b'EYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKGITKPVKQLKDNMKQKHEERIKKLAKSGI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 60S ribosomal protein L13-A
publication title Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
pubmed doi rcsb
molecule tags Ribosome
total genus 21
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2020-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
o PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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