7BUVA

Eucommia ulmoides tpt3, crystal form 2
Total Genus 122
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
343
structure length
330
Chain Sequence
SKFVKVYSVLKKELLHDSAFGLTDDSRNWVERIMDYNVPGGKLNRGLSVVDSYKLLRELTNYKSELSDDEIFLASVLGWSVEWIQACALVLDDIMWFRLPKVGMIAINDGLILRNHVPRILRTHFQTEHYYLQLVDLFHEVECQTIAGQMLDLITTLAGEINLSSYSLPVYQQITLSKTSYYSFYLPVACALVMLGENLESHDDMKDILLEMGTYFQVQDDYLDCFGDPEVIGKIGTDIEDNKCTWLVVQALEHCNEEQKKLLYDNYGRKDPKQVAKVKELYKTLNLEDLFTQYENKTCKKLTKSIEALPNVAVQAVLKSFLAKIHKRLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Plant protein
molecule keywords FPS3
publication title Functional and mechanistic insights into ultrahigh molecular weight trans-1,4-polyisoprene biosynthesis by novel plant prenyltransferases
rcsb
source organism Eucommia ulmoides
total genus 122
structure length 330
sequence length 343
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2020-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00348 polyprenyl_synt Polyprenyl synthetase
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...