7BX7A

Cryo-em structure of amyloid fibril formed by hnrnpa1 low complexity domain
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
45
structure length
45
Chain Sequence
GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein fibril
molecule keywords Heterogeneous nuclear ribonucleoprotein A1
publication title The nuclear localization sequence mediates hnRNPA1 amyloid fibril formation revealed by cryoEM structure.
pubmed doi rcsb
source organism Homo sapiens
total genus 1
structure length 45
sequence length 45
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2020-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11627 HnRNPA1 Nuclear factor hnRNPA1
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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