7BZ0A

Complex structure of alginate lyase alyf-ou02 with g6
Total Genus 203
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
203
sequence length
498
structure length
496
Chain Sequence
b'SISEIDRSYLLSSDRLTEVDGNTLDVASEEQVAALKAQFENLKDGDEVVIPNGKYANLGQVTITANDVTIRAEQAGAAWLTGLIQFELKGDDITLDGLVFTEGGPNERFGAVRMMGNGNTLQNSTFYYFNHDYTYEPDERRSEYPKYLWVSLWGKDGKVINNRFEGKQKRGTLIGVQKDDTPDNHLIANNIFMDQKPNQFNEFDIKEAIRYNGNSWEAIRIGDSKSSQWDSSSKFVNNLMIDMDGERELISIASGDNTISGNTIFQSAALISLRHGKGNTVENNMILGNEKRLTGGIRIYDEDHVIRNNYIANTRGRDGEGNADLRGGIVINTGIIDVANGEQLDQSVKGKELNKQWTPKNITIENNSLVDTEWGIVYGNQSHRVSLFNNAEVEGIYAGVDIAFKHNVVDNSQTPEFVSVRATHDFPLVGATYTDETYVGQVTDSELIESYSVELPKVTVENGLNAYQGEGADVSKLSVVTAETAGPDYVLENTTK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Alginate lyase AlyF-OU02
publication title Structural insights into the substrate-binding cleft of AlyF reveal the first long-chain alginate-binding mode.
pubmed doi rcsb
source organism Vibrio splendidus
molecule tags Lyase
total genus 203
structure length 496
sequence length 498
ec nomenclature
pdb deposition date 2020-04-26
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...