7C5NO

Crystal structure of c150a+h177a mutant of glyceraldehyde-3-phosphate-dehydrogenase1 from escherichia coli at 2.0 angstrom resolution
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
337
structure length
337
Chain Sequence
HMASMSKVGINGFGRIGRLVLRRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDTLDGNDTIVSVASATTNCLAPMAKALHDSFGIEVGTMTTIAAYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSVTELVSILGKKVTAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDATQTEITAVGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Glyceraldehyde-3-phosphate dehydrogenase
publication title Crystal Structure of Type1 Glyceraldehyde-3-Phosphate Dehydrogenase from Escherichia coli Provides New Insight into BPG Generation and Catalytic Mechanism
rcsb
source organism Escherichia coli bl21(de3)
total genus 110
structure length 337
sequence length 337
chains with identical sequence P, Q, R
ec nomenclature ec 1.2.1.-:
pdb deposition date 2020-05-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
O PF02800 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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