7C8PA

Structural and functional characterization of human group a rotavirus p[25] vp8*
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
161
structure length
161
Chain Sequence
VLDGPYQPTSFNLPVDYWMMMSPTQAGRVAEGTNGTDRWFACIIVEPNVSLQSRDYVLDGQTVQLQVDNTSNTMWKFILFIKLTKSGNYSQYSSLLTNHKLCAWIKRDSRVYWFDGTVPNSSDNYYLTINNDNSIVSSDVDFYLIPRTQTDSCRRCINNGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Outer capsid protein VP4
publication title Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen.
pubmed doi rcsb
source organism Rotavirus a
total genus 39
structure length 161
sequence length 161
chains with identical sequence B
ec nomenclature
pdb deposition date 2020-06-03
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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