7C9ZB

Coxsackievirus b1 f-particle
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
254
structure length
254
Chain Sequence
GYSDRVRSITLGNSTITTQECANVVVGYGVWPEYLKDNEATGEDQPTQPDVATCRFYTLESVQWMKNSAGWWWKLPDALSQMGLFGQNMQYHYLGRTGYTIHVQCNASKFHQGCLLVVCVPEAEMGCSNLNNTPKFAELSGGDNARMFTDTEVGTSNDKKVQTAVWNAGMGVGVGNLTIFPHQWINLRTNNSATIVMPYINSVPMDNMYRHNNLTLMIIPFVPLNYSEGSSPYVPITVTIAPMCAEYNGLRLAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords VP1
publication title Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
rcsb
total genus 22
structure length 254
sequence length 254
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2020-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00073 Rhv picornavirus capsid protein
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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