7COUT

Structure of cyanobacterial photosystem ii in the dark s1 state
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
29
structure length
29
Chain Sequence
ETITYVFIFACIIALFFFAIFFREPPRIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Photosystem II protein D1
publication title Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography
doi rcsb
total genus 9
structure length 29
sequence length 29
chains with identical sequence t
ec nomenclature
pdb deposition date 2020-08-05
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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