7CR8A

Synechocystis cas1-cas2-prespacerl complex
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
324
structure length
322
Chain Sequence
b'STLYLTQPDAVLSKKHEAFHVALKQEDGSWKKQPIPAQTLEDIVLLGYPSITGEALGYALELGLPVHYLTQFGKYVGSALPSESRNGQLRLAQFRAHEDPIQRLDIVKAFVKGKVHNQYNLLYRRGQVPLKGRGKLVMRQQTLEQVRGIEGLAAREYFASWQEMLGHEWTFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAVHIAGLDPYIGFLHETTRGQPAMILDLMEEFRALVADSVVLTVLKQREIQRQDFTESLGAFRLTDSATKTFLGAFDRKLSSEFKHPIFNYKCTYRRAIELQARLLARHLQEGVVYEPLVIR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CRISPR-associated endonuclease Cas1
molecule tags Immune system/dna
source organism Synechocystis sp. (strain pcc 6803 / kazusa)
publication title Mechanisms of spacer acquisition by sequential assembly of the adaptation module in Synechocystis.
pubmed doi rcsb
total genus 68
structure length 322
sequence length 324
chains with identical sequence B, C, D, I, J, K, L, Q, R, S, T, a, b, c, d, i, j, k, l, q, r, s, t
ec nomenclature ec 3.1.-.-:
pdb deposition date 2020-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01867 Cas_Cas1 CRISPR associated protein Cas1
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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