7D3XA

Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by apobec3a
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
199
structure length
199
Chain Sequence
MEASPASGPRHLMDPHIFTSNFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLNSGFYGRHAQLRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGQPFQPWDGLDEHSQALSGRLRAILQNQGN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords DNA dC->dU-editing enzyme APOBEC-3A
publication title Non-specific and specific interactions work cooperatively to promote cytidine deamination catalyzed by APOBEC3
rcsb
source organism Homo sapiens
total genus 40
structure length 199
sequence length 199
ec nomenclature ec 3.5.4.38: Single-stranded DNA cytosine deaminase.
pdb deposition date 2020-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05240 APOBEC_C APOBEC-like C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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