7EDXq

P53-bound tfiid-based core pic on hdm2 promoter
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
270
structure length
257
Chain Sequence
PYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into preinitiation complex assembly on core promoters.
pubmed doi rcsb
molecule keywords Transcription initiation factor TFIID subunit 1
molecule tags Transcription
source organism Homo sapiens
total genus 39
structure length 257
sequence length 270
ec nomenclature
pdb deposition date 2021-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
q PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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