7EXZB

Dgpb-dgpc complex apo 2.5 angstrom
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
139
structure length
139
Chain Sequence
LALRLNFVDVVCDDSLKNFWANGKKIGYQFDVRLSYYRGHFLSTIDEIGVKVDGVDVPAENISLCLDGKEYGVAELHDLVNVFWPIIEPATIKVFQPGGLSEEEHDVDFTLYFRSPYMALSETEYQSIDSCGSKRLNVQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords AP_endonuc_2 domain-containing protein
publication title DgpB-DgpC complex apo 2.5 angstrom
rcsb
source organism Human intestinal bacterium pue
total genus 32
structure length 139
sequence length 139
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2021-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF19906 DUF6379 Domain of unknown function (DUF6379)
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...