7JILl

70s ribosome flavobacterium johnsoniae
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
152
structure length
133
Chain Sequence
RKRAAKKRPLLPDPRFNDQLVTRFVNNLMWDGKKSTAFKVFYDAIDIIETKTSLEIWKDALTNVMPHVEVRFQIPMQIRPDRKISMAMKWLILYARRRNEKSMAQRLASECLAGAAVKKRMDTHKMAEANKAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords RNA (2862-MER)
publication title Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
pubmed doi rcsb
total genus 24
structure length 133
sequence length 152
ec nomenclature
pdb deposition date 2020-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
l PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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