The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
457
|
structure length |
457
|
Chain Sequence |
KPIIKGENLAYSMDEKVDLMKGITATDIEDGNITSKVQIKSSDFVEGKSGIFTVVYSVTDSDGLTSECSRTIAVTDKETQLSDLNWKSATIGSGSVRKDRAVSGNQIRLLNEDNSVETFAKGIGTHSYSEIVYNSEGYDIFDTWVGIDRHVADKKVSSVKFKVYVDGELKAETDVMRIDTPKKRLVVDVRNSKEIKLVVDVADNGNNWDHADWADAKFRNLAEYDASELNKAIEEAKKLDLNNYTEESSEALKNAISKGEEALLSKDKETINSALEELNKEMNSLVKVDLNAVINIPDKYLLKSIQNQLNKTGDITLGDMYSLTTLTLSGVEDLTGLENAKNLETLNMDYNEVKDLRPLSKLKKLNTLNAQEQFIAAGELKPSNGKVIGDSKVYNREGKNVAKTIRVVDKNGNTILEQDAKDEFTINTKDLSSGLYGVHVLFEDEGFSGVMFYLFNV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Sugar binding protein
|
| molecule keywords |
F5/8 type C domain protein
|
| publication title |
Molecular insights into architecturally complex glycopeptidases
rcsb |
| source organism |
Clostridium perfringens (strain atcc 13124 / dsm 756 / jcm 1290 / ncimb 6125 / n
|
| total genus |
139
|
| structure length |
457
|
| sequence length |
457
|
| ec nomenclature | |
| pdb deposition date | 2020-08-12 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
