7JSZI

Arfb rescue of a 70s ribosome stalled on truncated mrna with a partial a-site codon (+2-iv)
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
205
structure length
205
Chain Sequence
ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/translation
molecule keywords 50S ribosomal protein L2
publication title ArfB can displace mRNA to rescue stalled ribosomes.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
total genus 42
structure length 205
sequence length 205
ec nomenclature
pdb deposition date 2020-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
I PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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