7JTKM

Radial spoke 1 isolated from chlamydomonas reinhardtii
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
47
structure length
47
Chain Sequence
MSSTYQKPITIPGDFPAILKAFTREILRAQPSNIYEFGARYFSGLQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Flagellar radial spoke protein 1
publication title Structures of radial spokes and associated complexes important for ciliary motility.
pubmed doi rcsb
total genus 13
structure length 47
sequence length 47
chains with identical sequence N
ec nomenclature
pdb deposition date 2020-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF02197 RIIa Regulatory subunit of type II PKA R-subunit
M PF13499 EF-hand_7 EF-hand domain pair
M PF13833 EF-hand_8 EF-hand domain pair
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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