7JZVN

Cryo-em structure of the brca1-ubch5c/bard1 e3-e2 module bound to a nucleosome
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
104
structure length
104
Chain Sequence
KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase/dna
molecule keywords BRCA1,Ubiquitin-conjugating enzyme E2 D3
publication title BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1
doi rcsb
source organism Homo sapiens
total genus 31
structure length 104
sequence length 104
chains with identical sequence n
ec nomenclature
pdb deposition date 2020-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00125 Histone Core histone H2A/H2B/H3/H4
N PF16211 Histone_H2A_C C-terminus of histone H2A
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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