7KH1A7

Baseplate complex for myoviridae phage xm1
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
110
structure length
110
Chain Sequence
MRVRTLDDNGDWTFGRGKADYITSKKAIAQTVSTRIKSWANDNPLAMNANIDWKDLLGRKGTEDTILREIERVVVQTDGVIRVTELEVIKTEKRVQSILLSYDTIYDDSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords tail tube protein, gp7
publication title Near-atomic-resolution structure of Vibrio phage XM1 possessing a simple contractile DNA injection machine
rcsb
total genus 18
structure length 110
sequence length 110
chains with identical sequence B7, C7, D7, E7, F7
ec nomenclature
pdb deposition date 2020-10-19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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