The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
123
|
sequence length |
597
|
structure length |
589
|
Chain Sequence |
STFGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLSDISSQTQSIYIPRGVNVSALSRDVKWDFTPCKNLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGTVTYIAPPGNYDTSDVVLELEFEGIKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMIAFYDMARRAVETTWSIIREHMGEILYKLSSMKFKDPVKDGEAKIKADYAQLLEDMQNAF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Proton transport
|
| molecule keywords |
V-type proton ATPase catalytic subunit A
|
| publication title |
Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
rcsb |
| total genus |
123
|
| structure length |
589
|
| sequence length |
597
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
7.1.2.2: H(+)-transporting two-sector ATPase. |
| pdb deposition date | 2020-10-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00006 | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain |
| A | PF02874 | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain |
| A | PF16886 | ATP-synt_ab_Xtn | ATPsynthase alpha/beta subunit N-term extension |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
