7KV1A

Surface glycan-binding protein a from bacteroides uniformis
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
487
structure length
456
Chain Sequence
TDEHIQEALIAAYDPLHWPDWGLGQYNALNIDGEIMGDNFWVGGATKTDMQNWHMLFNYEANENNTLGSLWTVDYSGIKRCNDLLKYLDWGTDVTEANRKLYEMQARLLRVFYYNMLWHYFGNVPFYLENLSEYTAPQYTADQVYAELIAELEAVIDSKVLPLKYYKDDEGQLGRVTQAMAYMVYAEMVMYQNDESRFSKALGYMKELIDSPSFRLNPSFANIWETEGEWCDESIWEINYGTVLPTLISPNSFPGDDGWSKGNDGWGFMPMRLETYQMFSEQDKRRDATCWVIAEDVEYTKRYQDTHIWLQKYRPYDKNFKQNLNYNNNYRYYRYAETLLNAAELSLRTGGSGTGEAKTWLNEVRTRAGLAGLANVTVDDVLTERRLEFVGEGKRYFDLVRAEGISGASASNKATTALVPDEYGYRTNSWTAKKKYIPIAQGELDSDPALVQNAYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords SusD family protein
publication title Distinct protein architectures mediate species-specific beta-glucan binding and metabolism in the human gut microbiota
rcsb
source organism Bacteroides uniformis (strain atcc 8492 / dsm 6597 / cip 103695 / jcm 5828 / nct
total genus 174
structure length 456
sequence length 487
chains with identical sequence B
ec nomenclature
pdb deposition date 2020-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07980 SusD_RagB SusD family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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