The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
229
|
sequence length |
892
|
structure length |
683
|
Chain Sequence |
VKDIRFDYIRDRVCSCLKVPDSAYDKLVSGDGRTSLVQFMEEAHTKRLLIMLDGKDLSATVKPPPKFKKKTVYFLKLQETKLDNDNIKKLVIHGEISENPLETLAAISQDVFMPVLTAPANQQGWPDVVAKEVTENLHKFVSNVFVTIGQMKGQDKIHILESAIVTWTKQIKNVLKADLTELNFWSERAANLNSIHEQLTSEKTQKVVKVLELAKSTYYPAFQRLFREVEAAQQEANDNVKFLKLVDLFKPIMHTLMLIWKHSKSSSTRFVTLMQEICNDLIMQACKYVPSEAVDKLRMTLRVLGTFKNYYFEYRALSMQDTKFQNNSLFARLDSFLERCHDMMDLMSTCMQFNRLKGKVLTNGVKAIHQDFTSAVEKFQQAKQFDEDFFGFRVVIKELERRLAAIIIQAFDDCTTIGTTFKLLDSFELDREVIAHDLEKKHTDLLHSYARDLKDVADLFHQYKPYSGAAYWVRGLMERIKDPMDRLLTSELFREIQRTYDHLWEEMTEYRTRAVDAWCAQVAATSDEKLPALVRLLRETKYFLLLETSSAKDLFASADTFRQQISALDLICSIYNKVQRLAVEKPLVQQKLDAVEQALNRGLAEIDTYIKECMELVKDVDLVLNTIKDNVKATQGILFDELNDAFNQLIQQRHSEIRDAKGAASWRAYVDYFSNIVIDGFSA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Motor protein
|
| molecule keywords |
Heavy chain alpha
|
| publication title |
Structure of a microtubule-bound axonemal dynein
doi rcsb |
| total genus |
229
|
| structure length |
683
|
| sequence length |
892
|
| ec nomenclature | |
| pdb deposition date | 2020-12-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF03028 | Dynein_heavy | Dynein heavy chain region D6 P-loop domain |
| B | PF08385 | DHC_N1 | Dynein heavy chain, N-terminal region 1 |
| B | PF08393 | DHC_N2 | Dynein heavy chain, N-terminal region 2 |
| B | PF12774 | AAA_6 | Hydrolytic ATP binding site of dynein motor region |
| B | PF12775 | AAA_7 | P-loop containing dynein motor region |
| B | PF12777 | MT | Microtubule-binding stalk of dynein motor |
| B | PF12780 | AAA_8 | P-loop containing dynein motor region D4 |
| B | PF12781 | AAA_9 | ATP-binding dynein motor region |
| B | PF17852 | Dynein_AAA_lid | Dynein heavy chain AAA lid domain |
| B | PF17857 | AAA_lid_1 | AAA+ lid domain |
| B | PF18198 | AAA_lid_11 | Dynein heavy chain AAA lid domain |
| B | PF18199 | Dynein_C | Dynein heavy chain C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
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