7KZNC

Outer dynein arm core subcomplex from c. reinhardtii
Total Genus 306
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
306
sequence length
1161
structure length
965
Chain Sequence
MALDNRHRLIVGKLAEAFGLPENVIEKTLTQDKQAVNSFFTPAGPPSLVFVYQVKEDKLKDGSVGPVDNKPTLHRIGPHERIHNSVYFTRLNPKGINEKTLEADMGSGELSVLWALENFKAIVSDLYLPIMQEQQQWGKMSTEYLEDFLSSTAKFGSMLTEAVADDDTLQEMEECLTEWCREAELLLNQTNKIKDGEERGPDTELEYWRTRMSNFNSITEHLKKECKLVLGICSHAKAYLRWRGLDVQITDAANESKDNVKYLATLEKSMEPMYQGRVTDITESLPALMTNVRMMYTIATAEHMTRLFTKITNQLVRRCKEQIMEDKVTLIGNMKVSVELANVYRQQYRLAKETLAAQPEQAIFLKFDLSSKALHKLIDMFTTIHQFSSLEQHTHIEGLDTMLKSLNNIIDDVKRKPYDLLDYSRNAFDTDFLEFNVQINDLELQLQGFVNASFEHITSTEHALSLLAQFQAIMQRETLQQDLENKYMVIFQNYAKDLDAVQKLYEKNKYEPPVPRNAPPVAGNIMWARQLLRRIEAPMQLAQAKESKKNIKTYNKVAKALIEFETLWHQAWIKSIEQCKAQLVREAKYMQRFNIRCSSPSQMVLLQEEKFKFYHNQLTHLVREYEHVLGRGARPHLDDMERKIAPLNIDGYLHRFKQGLARLEELVRKVVDLTENRVDSNLGAISSTLLVELEGFVEQNRFQKKQAELLAIRNEEVRRAIEDLYTLVRNYPRENTEDVLDEKEVSLLVRHYSKNMYNAIMQCTLNSLQAMKRRLGTLEEIQAAINQCAKKVLTISKQLRRWVKAVLRLTGSVEGIKTQVGEYIRTFDKYDFLQAAYDHFMRSLEAFEAELKKYMAIETEVTMINGVNHPLKNSLKAEAVSWKTQFAQNLHKQCSDDLKLDNYIRDLEDVRNVMAVLKVREKESEIDNLIGPIEEMYGLTTMVSDLRYGWKKLKKVATEVSDNLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
molecule keywords Heavy chain alpha
publication title Structure of a microtubule-bound axonemal dynein
doi rcsb
total genus 306
structure length 965
sequence length 1161
ec nomenclature
pdb deposition date 2020-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03028 Dynein_heavy Dynein heavy chain region D6 P-loop domain
C PF08385 DHC_N1 Dynein heavy chain, N-terminal region 1
C PF08393 DHC_N2 Dynein heavy chain, N-terminal region 2
C PF12774 AAA_6 Hydrolytic ATP binding site of dynein motor region
C PF12775 AAA_7 P-loop containing dynein motor region
C PF12777 MT Microtubule-binding stalk of dynein motor
C PF12780 AAA_8 P-loop containing dynein motor region D4
C PF12781 AAA_9 ATP-binding dynein motor region
C PF17852 Dynein_AAA_lid Dynein heavy chain AAA lid domain
C PF17857 AAA_lid_1 AAA+ lid domain
C PF18198 AAA_lid_11 Dynein heavy chain AAA lid domain
C PF18199 Dynein_C Dynein heavy chain C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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