7LH5BY

Crystal structure of the thermus thermophilus 70s ribosome in complex with plazomicin, mrna and trnas
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
100
structure length
100
Chain Sequence
RVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S ribosomal RNA
publication title Structural Basis for Plazomicin Antibiotic Action and Resistance
doi rcsb
source organism Escherichia coli
total genus 7
structure length 100
sequence length 100
chains with identical sequence DY
ec nomenclature
pdb deposition date 2021-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
BY PF00467 KOW KOW motif
BY PF17136 ribosomal_L24 Ribosomal proteins 50S L24/mitochondrial 39S L24
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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