7MUSAH

Reconstruction of the legionella pneumophila dot/icm t4ss 3dva map 2
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
258
structure length
258
Chain Sequence
AEVIDKKAFKDMTRNLYPLNPEQVVKLKQIYETSEYAKAATPGTPPKPTATSQFVNLSPGSTPPVIRLSQGFVSSLVFLDSTGAPWPIAAYDLGDPSSFNIQWDKTSNTLMIQATKLYNYGNLAVRLRGLNTPVMLTLIPGQKAVDYRVDLRVQGYGPNAKSMPTEEGIPPSANDLLLHVLEGVPPPGSRRLVVSGGDARAWLSNEKMYVRTNLTILSPGWLASMTSADGTHAYEMQKSPVLLVSWHGKVMQLKVEGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translocase
molecule keywords IcmE protein
publication title Cryo-EM reconstructions of the Legionella pneumophila Dot/Icm T4SS reveal new components and provide insight into symmetry mismatch between subcomplexes
rcsb
total genus 48
structure length 258
sequence length 258
chains with identical sequence BH, CH, DH, EH, FH, GH, HH, IH, JH, KH, LH, MH, VH, WH, XH, YH, ZH
ec nomenclature
pdb deposition date 2021-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AH PF12293 T4BSS_DotH_IcmK Putative outer membrane core complex of type IVb secretion
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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