7MUWAG

Reconstruction of the legionella pneumophila dot/icm t4ss 3dva map 4
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
185
structure length
165
Chain Sequence
IIKTGDIMFAVLDTSVNSDEPGPILATIVTGKLKGSKLIGSFNLPSNADKMVITFNTMSIPGAEKTISISAYAIDPNTARTALASRTNHHYLMRYGSLFASSFLQGFGNAFQSANTTSTLENAVIGLATVGKAWSQQAQQLFNTPTTVEVYSGTGLGILFTQDVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Translocase
molecule keywords IcmE protein
publication title Cryo-EM reconstructions of the Legionella pneumophila Dot/Icm T4SS reveal new components and provide insight into symmetry mismatch between subcomplexes
rcsb
total genus 25
structure length 165
sequence length 185
chains with identical sequence Ag, BG, Bg, CG, Cg, DG, Dg, EG, Eg, FG, Fg, GG, Gg, HG, Hg, IG, Ig, JG, Jg, KG, Kg, LG, Lg, MG, Mg, NG, OG, PG, VG, WG, XG, YG, ZG
ec nomenclature
pdb deposition date 2021-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
AG PF03743 TrbI Bacterial conjugation TrbI-like protein
AG PF13599 Pentapeptide_4 Pentapeptide repeats (9 copies)
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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