The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
258
|
structure length |
258
|
Chain Sequence |
KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYLI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein
|
| molecule keywords |
DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-PKcs
|
| publication title |
Cryo-EM of NHEJ supercomplexes provides insights into DNA repair.
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
52
|
| structure length |
258
|
| sequence length |
258
|
| chains with identical sequence |
P
|
| ec nomenclature |
ec
6.5.1.1: DNA ligase (ATP). |
| pdb deposition date | 2021-02-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| M | PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain |
| M | PF01068 | DNA_ligase_A_M | ATP dependent DNA ligase domain |
| M | PF04675 | DNA_ligase_A_N | DNA ligase N terminus |
| M | PF04679 | DNA_ligase_A_C | ATP dependent DNA ligase C terminal region |
| M | PF11411 | DNA_ligase_IV | DNA ligase IV |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
