7NSOe

Structure of ermdl-erythromycin-stalled 70s e. coli ribosomal complex with p-trna
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
157
structure length
157
Chain Sequence
ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and mechanistic basis for translation inhibition by macrolide and ketolide antibiotics
rcsb
molecule keywords 23S rRNA (2903-MER)
molecule tags Ribosome
total genus 30
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2021-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
e PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain
e PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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