7NVSR

Rna polymerase ii core pre-initiation complex with closed promoter dna in proximal position
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
237
structure length
222
Chain Sequence
AERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQGRTEVSFTLNEDLANEHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAASENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords RPB1
publication title Structures of mammalian RNA polymerase II pre-initiation complexes.
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 222
sequence length 237
ec nomenclature
pdb deposition date 2021-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF02270 TFIIF_beta TFIIF, beta subunit HTH domain
R PF17683 TFIIF_beta_N TFIIF, beta subunit N-terminus
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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