7NVV5

Xpb-containing part of tfiih in a post-translocated state (with adp-bef3)
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
66
structure length
66
Chain Sequence
NVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGELMDQNAFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords General transcription factor IIH subunit 4
publication title Structures of mammalian RNA polymerase II pre-initiation complexes.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2021-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
5 PF06331 Tfb5 Transcription factor TFIIH complex subunit Tfb5
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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