7OTLA

Structure of a psychrophilic cca-adding enzyme crystallized by counter-diffusion
Total Genus 125
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
376
structure length
366
Chain Sequence
DDKMNTAIKVIHTLKAAGFEAYIVGGAVRDLLLGKTPHDVDVASSALPQQVKVLFDRTVDTGIDHGTVLVLLDGEGIEVTTFRTESVEFVLSLEEDLRRRDFTINAMAMTEDLKIIDPFGGKEDLKNKVIRAVGDPDERFEEDALRMLRAIRFSGQLDFIIDMKTLLSIRRHARLIRFIAVERLKSEIDKIFVNPSMQKSMAYLKDSVLTRFLPVGGLFEVDWITYHTDGNPTYGWLYLLHQQKRQFTDIKDYRFSNEEKRLIEKSLELTALNTWDQWTFYKYTLKQLEMASRVTGKKKDLAAIKRQLPIQSRSELAVDGWDLIEWSGAKSGPWLKVWIEKIERLIVYGILKNDKELIKDWFEDEY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Rna binding protein
molecule keywords CCA-adding enzyme
publication title CCA-addition in the cold: Structural characterization of the psychrophilic CCA-adding enzyme from the permafrost bacterium Planococcus halocryophilus
doi rcsb
source organism Planococcus halocryophilus
total genus 125
structure length 366
sequence length 376
ec nomenclature
pdb deposition date 2021-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01743 PolyA_pol Poly A polymerase head domain
A PF12627 PolyA_pol_RNAbd Probable RNA and SrmB- binding site of polymerase A
A PF13735 tRNA_NucTran2_2 tRNA nucleotidyltransferase domain 2 putative
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...