7RQ817

Crystal structure of the wild-type thermus thermophilus 70s ribosome in complex with iboxamycin, mrna, deacylated a- and e-site trnas, and aminoacylated p-site trna at 2.50a resolution
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
48
structure length
48
Chain Sequence
MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/rna
molecule keywords 23S Ribosomal RNA
publication title A synthetic antibiotic scaffold effective against multidrug-resistant bacterial pathogens
rcsb
source organism Escherichia coli
total genus 10
structure length 48
sequence length 48
chains with identical sequence 27
ec nomenclature
pdb deposition date 2021-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
17 PF00468 Ribosomal_L34 Ribosomal protein L34
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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