The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
250
|
sequence length |
907
|
structure length |
895
|
Chain Sequence |
VTDSEKVAEYLRRATLDLRAARQRIRELESEPIAIIGMACRLPGGVDSPEGLWELVDSGTDAIAGFPLDRGWDVEGMYDPDAEAPGKTYVKEAGFLYDAGEFDAGFFGISPREAVSMDPQQRLMLEASWEAFERAGLDPARQRGTATGVFVGATATGYVGAEGFAITGNMTAVTSGRISYTLGLQGPAVTIDTACSSSLVALHLACQSLRQGECTTALAGGVTVMPTPTAFTEFSRQRGLAPDGRCKSFAAAADGTNWAEGVAVLVVERLSDARRNGHRVLAVVRGTAINQDGASNGLSAPNDLAQERVIRSALDNAGLTASDVDAVEAHGTGTTLGDPIEAQALLAAYGHERPAHRPLRVGSLKSNIGHAGPAAGVAGVIKMVMAMRHGVLPRSLHIDEPTPQVDWSSGAVTLLTEPVDWPDSDRPRRAGVSAFGISGTNAHVILEQAPTQPAPPVPAAPWLLSAKTPAALRAQARRLHTHLARHPHPDPTDIAHALATTRTPHEHRAALVTDDHGTRGPALAALAEGAPDACLISGTALSKGRTVFVFPGQGSQWTGMGRELLHTSPEFAAYIAECETALNDFVDWSLTDVLRGTEGAPGYDRVDVVQPALFAVMVSLARLWQHHGIHPDAVIGHSQGEIAAAHIAGALSLQDAARIVALRSQALLPLAGLGGMTSLALPHDQALQLIQPWGQDLSIASVNGPHSTVVSGTTHALDELHTTCDTQGVRARRIPVDYASHSAQVESIRDTVLQAATGINPQPTTIPLYSTVTGQPIDGTQLDADYWYTNLRHTVRFEETTRALLGSGHRHFIETTAHPVLALALEETIEATGSDARVTGTLRRDHGDLTQLHTALATAWTHGIDVDWTAVLGDRRTPFELPTYAFQRQRYWLEP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Biosynthetic protein
|
| molecule keywords |
6-deoxyerythronolide-B synthase EryA2, modules 3 and 4, Lsd14 Polyketide synthase fusion
|
| publication title |
Modular polyketide synthase contains two reaction chambers that operate asynchronously
doi rcsb |
| source organism |
Saccharopolyspora erythraea
|
| total genus |
250
|
| structure length |
895
|
| sequence length |
907
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
2.3.1.94: 6-deoxyerythronolide-B synthase. |
| pdb deposition date | 2021-09-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00550 | PP-binding | Phosphopantetheine attachment site |
| A | PF00698 | Acyl_transf_1 | Acyl transferase domain |
| A | PF02801 | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain |
| A | PF08659 | KR | KR domain |
| A | PF08990 | Docking | Erythronolide synthase docking domain |
| A | PF16197 | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension |
| A | PF18369 | PKS_DE | Polyketide synthase dimerisation element domain |
| A | PF00550 | PP-binding | Phosphopantetheine attachment site |
| A | PF00698 | Acyl_transf_1 | Acyl transferase domain |
| A | PF02801 | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain |
| A | PF08659 | KR | KR domain |
| A | PF08990 | Docking | Erythronolide synthase docking domain |
| A | PF16197 | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
