8GEPA

Sulfite reductase hemoprotein nitrate complex
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
490
structure length
456
Chain Sequence
b'LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SULFITE REDUCTASE HEMOPROTEIN
publication title Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 151
structure length 456
sequence length 490
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 1997-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 8gepA01
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 8gepA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 8gepA02
1ZJ8A 2Y0FA 5GEPA 3OR2B 3VM1A 3MMAB 3MMBB 3MMCA 3GEOA 3MM6A 5AOPA 4G38A 3B0MA 4S3CA 3MM5A 3OR2A 4S38A 3MMAA 4S3DA 3B0HA 3MMBA 8GEPA 2GEPA 3OR1B 3VLYA 3MM7B 1ZJ9A 2V4JB 3VKPA 1AOPA 3MM8B 2XSJB 4S3BA 4S39A 3VLZA 3MM9B 3VKTA 4AOPA 4GEPA 4S3EA 3B0JA 3OR1A 3MM6B 3MM7A 2V4JA 4HTRA 4S23A 3MM8A 3VKRA 6GEPA 2XSJA 4S3FA 3VKSA 2AKJA 3MM9A 3VM0A 3NOYA 4G39A 3AOPA 3VKQA 3VLXA 7GEPA 3B0GA 3MMCB 3B0NA 3MM5B 3B0LA 4S3AA 4G9PA 2AOPA
chains in the Genus database with same CATH superfamily
1ZJ8A 2Y0FA 5GEPA 3OR2B 3VM1A 3MMAB 3MMBB 3MMCA 3GEOA 3MM6A 5AOPA 4G38A 3B0MA 4S3CA 3MM5A 3OR2A 4S38A 3MMAA 4S3DA 3B0HA 3MMBA 8GEPA 2GEPA 3OR1B 3VLYA 3MM7B 1ZJ9A 2V4JB 3VKPA 1AOPA 3MM8B 2XSJB 4S3BA 4S39A 3VLZA 3MM9B 3VKTA 4AOPA 4GEPA 4S3EA 3B0JA 3OR1A 3MM6B 3MM7A 2V4JA 4HTRA 4S23A 3MM8A 3VKRA 6GEPA 2XSJA 4S3FA 3VKSA 2AKJA 3MM9A 3VM0A 3NOYA 4G39A 3AOPA 3VKQA 3VLXA 7GEPA 3B0GA 3MMCB 3B0NA 3MM5B 3B0LA 4S3AA 4G9PA 2AOPA
chains in the Genus database with same CATH topology
1ZJ8A 2Y0FA 5GEPA 3OR2B 3VM1A 3MMAB 3MMBB 3MMCA 3GEOA 3MM6A 5AOPA 4G38A 3B0MA 4S3CA 3MM5A 3OR2A 4S38A 3MMAA 4S3DA 3B0HA 3MMBA 8GEPA 2GEPA 3OR1B 3VLYA 3MM7B 1ZJ9A 2V4JB 3VKPA 1AOPA 3MM8B 2XSJB 4S3BA 4S39A 3VLZA 3MM9B 3VKTA 4AOPA 4GEPA 4S3EA 3B0JA 3OR1A 3MM6B 3MM7A 2V4JA 4HTRA 4S23A 3MM8A 3VKRA 6GEPA 2XSJA 4S3FA 3VKSA 2AKJA 3MM9A 3VM0A 3NOYA 4G39A 3AOPA 3VKQA 3VLXA 7GEPA 3B0GA 3MMCB 3B0NA 3MM5B 3B0LA 4S3AA 4G9PA 2AOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZJ8 A;  2Y0F A;  5GEP A;  3OR2 B;  3VM1 A;  3MMA B;  3MMB B;  3MMC A;  3GEO A;  3MM6 A;  5AOP A;  4G38 A;  3B0M A;  4S3C A;  3MM5 A;  3OR2 A;  4S38 A;  3MMA A;  4S3D A;  3B0H A;  3MMB A;  8GEP A;  2GEP A;  3OR1 B;  3VLY A;  3MM7 B;  1ZJ9 A;  2V4J B;  3VKP A;  1AOP A;  3MM8 B;  2XSJ B;  4S3B A;  4S39 A;  3VLZ A;  3MM9 B;  3VKT A;  4AOP A;  4GEP A;  4S3E A;  3B0J A;  3OR1 A;  3MM6 B;  3MM7 A;  2V4J A;  4HTR A;  4S23 A;  3MM8 A;  3VKR A;  6GEP A;  2XSJ A;  4S3F A;  3VKS A;  2AKJ A;  3MM9 A;  3VM0 A;  3NOY A;  4G39 A;  3AOP A;  3VKQ A;  3VLX A;  7GEP A;  3B0G A;  3MMC B;  3B0N A;  3MM5 B;  3B0L A;  4S3A A;  4G9P A;  2AOP A; 
#chains in the Genus database with same CATH topology
 1ZJ8 A;  2Y0F A;  5GEP A;  3OR2 B;  3VM1 A;  3MMA B;  3MMB B;  3MMC A;  3GEO A;  3MM6 A;  5AOP A;  4G38 A;  3B0M A;  4S3C A;  3MM5 A;  3OR2 A;  4S38 A;  3MMA A;  4S3D A;  3B0H A;  3MMB A;  8GEP A;  2GEP A;  3OR1 B;  3VLY A;  3MM7 B;  1ZJ9 A;  2V4J B;  3VKP A;  1AOP A;  3MM8 B;  2XSJ B;  4S3B A;  4S39 A;  3VLZ A;  3MM9 B;  3VKT A;  4AOP A;  4GEP A;  4S3E A;  3B0J A;  3OR1 A;  3MM6 B;  3MM7 A;  2V4J A;  4HTR A;  4S23 A;  3MM8 A;  3VKR A;  6GEP A;  2XSJ A;  4S3F A;  3VKS A;  2AKJ A;  3MM9 A;  3VM0 A;  3NOY A;  4G39 A;  3AOP A;  3VKQ A;  3VLX A;  7GEP A;  3B0G A;  3MMC B;  3B0N A;  3MM5 B;  3B0L A;  4S3A A;  4G9P A;  2AOP A; 
#chains in the Genus database with same CATH homology
 1ZJ8 A;  2Y0F A;  5GEP A;  3OR2 B;  3VM1 A;  3MMA B;  3MMB B;  3MMC A;  3GEO A;  3MM6 A;  5AOP A;  4G38 A;  3B0M A;  4S3C A;  3MM5 A;  3OR2 A;  4S38 A;  3MMA A;  4S3D A;  3B0H A;  3MMB A;  8GEP A;  2GEP A;  3OR1 B;  3VLY A;  3MM7 B;  1ZJ9 A;  2V4J B;  3VKP A;  1AOP A;  3MM8 B;  2XSJ B;  4S3B A;  4S39 A;  3VLZ A;  3MM9 B;  3VKT A;  4AOP A;  4GEP A;  4S3E A;  3B0J A;  3OR1 A;  3MM6 B;  3MM7 A;  2V4J A;  4HTR A;  4S23 A;  3MM8 A;  3VKR A;  6GEP A;  2XSJ A;  4S3F A;  3VKS A;  2AKJ A;  3MM9 A;  3VM0 A;  3NOY A;  4G39 A;  3AOP A;  3VKQ A;  3VLX A;  7GEP A;  3B0G A;  3MMC B;  3B0N A;  3MM5 B;  3B0L A;  4S3A A;  4G9P A;  2AOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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