8JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with l-alanine
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
source organism Homo sapiens
total genus 125
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 8jdwA00
2JDWA 4YT9A 9JDWA 3P8EA 4N28A 2DEXX 1G61A 5JDWA 3RHYA 4N2DA 3JDWA 1BWDA 2DEYX 4E4JA 2JDXA 2EWOA 3P8PA 1G62A 2JAJA 4N2IA 4DKTA 2CI6A 5M3QA 6JDWA 1H70A 4N2GA 4N2FA 2CI3A 5AK8A 1JDWA 3I4AA 1RXXA 1XKNA 4N2BA 4N26A 4X8GA 3H7KA 2CI7A 2ABRA 4X8CA 4N2MA 3B1TA 4BOFA 2AAFA 2C6ZA 1JDXA 5AN9I 4YTBA 2A9GA 5AK7A 2CI1A 2DEWX 4N20A 3H7CX 2CMUA 7JDWA 2ACIA 8JDWA 4N2AA 4N2CA 1WD8A 1VKPA 4N2HA 2DW5A 3APNA 2CI5A 3I2EA 2CI4A 4N24A 3HVMA 4N2EA 4N2LA 3APMA 3B1UA 4YTGA 2Q3UA 1S9RA 2JERA 4N2KA 4N25A 4N2NA 1ZBRA 1WDAA 1WD9A 5HP5A 2JAIA 4JDWA 1LXYA 3BPBA 4N22A
chains in the Genus database with same CATH superfamily
1YNIA 2JDWA 4YT9A 9JDWA 3P8EA 4N28A 2DEXX 1G61A 5JDWA 3RHYA 4N2DA 3JDWA 1BWDA 1YNFA 2DEYX 4E4JA 2JDXA 2EWOA 3P8PA 1G62A 2JAJA 4N2IA 4DKTA 2CI6A 5M3QA 6JDWA 1H70A 4N2GA 4N2FA 2CI3A 5AK8A 1JDWA 3I4AA 1RXXA 1XKNA 4N2BA 4N26A 4X8GA 3H7KA 2CI7A 2ABRA 4X8CA 4N2MA 3B1TA 4BOFA 2AAFA 2C6ZA 1JDXA 5AN9I 4YTBA 2A9GA 5AK7A 2CI1A 2DEWX 4N20A 3H7CX 2CMUA 7JDWA 2ACIA 8JDWA 4N2AA 4N2CA 1WD8A 1VKPA 4N2HA 2DW5A 3APNA 2CI5A 3I2EA 1YNHA 2CI4A 4N24A 3HVMA 4N2EA 4N2LA 3APMA 3B1UA 4YTGA 2Q3UA 1S9RA 2JERA 4N2KA 4N25A 4N2NA 1ZBRA 1WDAA 1WD9A 5HP5A 2JAIA 4JDWA 1LXYA 3BPBA 4N22A
chains in the Genus database with same CATH topology
2JDWA 4YT9A 9JDWA 3P8EA 4N28A 2DEXX 1G61A 5JDWA 3RHYA 4N2DA 3JDWA 1BWDA 2DEYX 4E4JA 2JDXA 2EWOA 3P8PA 1G62A 2JAJA 4N2IA 4DKTA 2CI6A 5M3QA 6JDWA 1H70A 4N2GA 4N2FA 2CI3A 5AK8A 1JDWA 3I4AA 1RXXA 1XKNA 4N2BA 4N26A 4X8GA 3H7KA 2CI7A 2ABRA 4X8CA 4N2MA 3B1TA 4BOFA 2AAFA 2C6ZA 1JDXA 5AN9I 4YTBA 2A9GA 5AK7A 2CI1A 2DEWX 4N20A 3H7CX 2CMUA 7JDWA 2ACIA 8JDWA 4N2AA 4N2CA 1WD8A 1VKPA 4N2HA 2DW5A 3APNA 2CI5A 3I2EA 2CI4A 4N24A 3HVMA 4N2EA 4N2LA 3APMA 3B1UA 4YTGA 2Q3UA 1S9RA 2JERA 4N2KA 4N25A 4N2NA 1ZBRA 1WDAA 1WD9A 5HP5A 2JAIA 4JDWA 1LXYA 3BPBA 4N22A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JDW A;  4YT9 A;  9JDW A;  3P8E A;  4N28 A;  2DEX X;  1G61 A;  5JDW A;  3RHY A;  4N2D A;  3JDW A;  1BWD A;  2DEY X;  4E4J A;  2JDX A;  2EWO A;  3P8P A;  1G62 A;  2JAJ A;  4N2I A;  4DKT A;  2CI6 A;  5M3Q A;  6JDW A;  1H70 A;  4N2G A;  4N2F A;  2CI3 A;  5AK8 A;  1JDW A;  3I4A A;  1RXX A;  1XKN A;  4N2B A;  4N26 A;  4X8G A;  3H7K A;  2CI7 A;  2ABR A;  4X8C A;  4N2M A;  3B1T A;  4BOF A;  2AAF A;  2C6Z A;  1JDX A;  5AN9 I;  4YTB A;  2A9G A;  5AK7 A;  2CI1 A;  2DEW X;  4N20 A;  3H7C X;  2CMU A;  7JDW A;  2ACI A;  8JDW A;  4N2A A;  4N2C A;  1WD8 A;  1VKP A;  4N2H A;  2DW5 A;  3APN A;  2CI5 A;  3I2E A;  2CI4 A;  4N24 A;  3HVM A;  4N2E A;  4N2L A;  3APM A;  3B1U A;  4YTG A;  2Q3U A;  1S9R A;  2JER A;  4N2K A;  4N25 A;  4N2N A;  1ZBR A;  1WDA A;  1WD9 A;  5HP5 A;  2JAI A;  4JDW A;  1LXY A;  3BPB A;  4N22 A; 
#chains in the Genus database with same CATH topology
 1YNI A;  2JDW A;  4YT9 A;  9JDW A;  3P8E A;  4N28 A;  2DEX X;  1G61 A;  5JDW A;  3RHY A;  4N2D A;  3JDW A;  1BWD A;  1YNF A;  2DEY X;  4E4J A;  2JDX A;  2EWO A;  3P8P A;  1G62 A;  2JAJ A;  4N2I A;  4DKT A;  2CI6 A;  5M3Q A;  6JDW A;  1H70 A;  4N2G A;  4N2F A;  2CI3 A;  5AK8 A;  1JDW A;  3I4A A;  1RXX A;  1XKN A;  4N2B A;  4N26 A;  4X8G A;  3H7K A;  2CI7 A;  2ABR A;  4X8C A;  4N2M A;  3B1T A;  4BOF A;  2AAF A;  2C6Z A;  1JDX A;  5AN9 I;  4YTB A;  2A9G A;  5AK7 A;  2CI1 A;  2DEW X;  4N20 A;  3H7C X;  2CMU A;  7JDW A;  2ACI A;  8JDW A;  4N2A A;  4N2C A;  1WD8 A;  1VKP A;  4N2H A;  2DW5 A;  3APN A;  2CI5 A;  3I2E A;  1YNH A;  2CI4 A;  4N24 A;  3HVM A;  4N2E A;  4N2L A;  3APM A;  3B1U A;  4YTG A;  2Q3U A;  1S9R A;  2JER A;  4N2K A;  4N25 A;  4N2N A;  1ZBR A;  1WDA A;  1WD9 A;  5HP5 A;  2JAI A;  4JDW A;  1LXY A;  3BPB A;  4N22 A; 
#chains in the Genus database with same CATH homology
 2JDW A;  4YT9 A;  9JDW A;  3P8E A;  4N28 A;  2DEX X;  1G61 A;  5JDW A;  3RHY A;  4N2D A;  3JDW A;  1BWD A;  2DEY X;  4E4J A;  2JDX A;  2EWO A;  3P8P A;  1G62 A;  2JAJ A;  4N2I A;  4DKT A;  2CI6 A;  5M3Q A;  6JDW A;  1H70 A;  4N2G A;  4N2F A;  2CI3 A;  5AK8 A;  1JDW A;  3I4A A;  1RXX A;  1XKN A;  4N2B A;  4N26 A;  4X8G A;  3H7K A;  2CI7 A;  2ABR A;  4X8C A;  4N2M A;  3B1T A;  4BOF A;  2AAF A;  2C6Z A;  1JDX A;  5AN9 I;  4YTB A;  2A9G A;  5AK7 A;  2CI1 A;  2DEW X;  4N20 A;  3H7C X;  2CMU A;  7JDW A;  2ACI A;  8JDW A;  4N2A A;  4N2C A;  1WD8 A;  1VKP A;  4N2H A;  2DW5 A;  3APN A;  2CI5 A;  3I2E A;  2CI4 A;  4N24 A;  3HVM A;  4N2E A;  4N2L A;  3APM A;  3B1U A;  4YTG A;  2Q3U A;  1S9R A;  2JER A;  4N2K A;  4N25 A;  4N2N A;  1ZBR A;  1WDA A;  1WD9 A;  5HP5 A;  2JAI A;  4JDW A;  1LXY A;  3BPB A;  4N22 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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