8MSIA

Type iii antifreeze protein isoform hplc 12 n14sq44t
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPISTALTLVMMRSEVVTPVGIPAEDIPRLVSMTVNRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 13
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 8msiA00
9MSIA 3CM4A 1EKLA 1KDEA 5MSIA 1C8AA 8AMEA 1UCSA 1VLIA 2LX3A 1MSIA 1KDFA 2WQPA 1OPSA 1XUZA 4IPIA 1WVOA 9AMEA 4MSIA 8MSIA 2MSIA 1JABA 1B7IA 2MSJA 1HG7A 6AMEA 4AMEA 1AMEA 3RDNA 1B7JA 3MSIA 4UR4A 2JIAA 7MSIA 1C89A 1XUUA 6MSIA 3QF6A 2LX2A 4IPJA 2SPGA 3AMEA 3NLAA 7AMEA 3FRNA 1GZIA 4UR6A 2AMEA 2ZDRA 3G8RA 1MSJA 1B7KA 4NY6A
chains in the Genus database with same CATH superfamily
9MSIA 3CM4A 1EKLA 1KDEA 5MSIA 1C8AA 8AMEA 1UCSA 1VLIA 2LX3A 1MSIA 1KDFA 2WQPA 1OPSA 1XUZA 4IPIA 1WVOA 9AMEA 4MSIA 8MSIA 2MSIA 1JABA 1B7IA 2MSJA 1HG7A 6AMEA 4AMEA 1AMEA 3RDNA 1B7JA 3MSIA 4UR4A 2JIAA 3K3SA 7MSIA 1XUUA 6MSIA 3QF6A 1C89A 2LX2A 4IPJA 3LAZA 2SPGA 3AMEA 3NLAA 7AMEA 3FRNA 1GZIA 4UR6A 2AMEA 2ZDRA 3G8RA 1MSJA 1B7KA 4NY6A
chains in the Genus database with same CATH topology
9MSIA 3CM4A 1EKLA 1KDEA 5MSIA 1C8AA 8AMEA 1UCSA 1VLIA 2LX3A 1MSIA 1KDFA 2WQPA 1OPSA 1XUZA 4IPIA 1WVOA 9AMEA 4MSIA 8MSIA 2MSIA 1JABA 1B7IA 2MSJA 1HG7A 6AMEA 4AMEA 1AMEA 3RDNA 1B7JA 3MSIA 4UR4A 2JIAA 7MSIA 1C89A 1XUUA 6MSIA 3QF6A 2LX2A 4IPJA 2SPGA 3AMEA 3NLAA 7AMEA 3FRNA 1GZIA 4UR6A 2AMEA 2ZDRA 3G8RA 1MSJA 1B7KA 4NY6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 9MSI A;  3CM4 A;  1EKL A;  1KDE A;  5MSI A;  1C8A A;  8AME A;  1UCS A;  1VLI A;  2LX3 A;  1MSI A;  1KDF A;  2WQP A;  1OPS A;  1XUZ A;  4IPI A;  1WVO A;  9AME A;  4MSI A;  8MSI A;  2MSI A;  1JAB A;  1B7I A;  2MSJ A;  1HG7 A;  6AME A;  4AME A;  1AME A;  3RDN A;  1B7J A;  3MSI A;  4UR4 A;  2JIA A;  7MSI A;  1C89 A;  1XUU A;  6MSI A;  3QF6 A;  2LX2 A;  4IPJ A;  2SPG A;  3AME A;  3NLA A;  7AME A;  3FRN A;  1GZI A;  4UR6 A;  2AME A;  2ZDR A;  3G8R A;  1MSJ A;  1B7K A;  4NY6 A; 
#chains in the Genus database with same CATH topology
 9MSI A;  3CM4 A;  1EKL A;  1KDE A;  5MSI A;  1C8A A;  8AME A;  1UCS A;  1VLI A;  2LX3 A;  1MSI A;  1KDF A;  2WQP A;  1OPS A;  1XUZ A;  4IPI A;  1WVO A;  9AME A;  4MSI A;  8MSI A;  2MSI A;  1JAB A;  1B7I A;  2MSJ A;  1HG7 A;  6AME A;  4AME A;  1AME A;  3RDN A;  1B7J A;  3MSI A;  4UR4 A;  2JIA A;  3K3S A;  7MSI A;  1XUU A;  6MSI A;  3QF6 A;  1C89 A;  2LX2 A;  4IPJ A;  3LAZ A;  2SPG A;  3AME A;  3NLA A;  7AME A;  3FRN A;  1GZI A;  4UR6 A;  2AME A;  2ZDR A;  3G8R A;  1MSJ A;  1B7K A;  4NY6 A; 
#chains in the Genus database with same CATH homology
 9MSI A;  3CM4 A;  1EKL A;  1KDE A;  5MSI A;  1C8A A;  8AME A;  1UCS A;  1VLI A;  2LX3 A;  1MSI A;  1KDF A;  2WQP A;  1OPS A;  1XUZ A;  4IPI A;  1WVO A;  9AME A;  4MSI A;  8MSI A;  2MSI A;  1JAB A;  1B7I A;  2MSJ A;  1HG7 A;  6AME A;  4AME A;  1AME A;  3RDN A;  1B7J A;  3MSI A;  4UR4 A;  2JIA A;  7MSI A;  1C89 A;  1XUU A;  6MSI A;  3QF6 A;  2LX2 A;  4IPJ A;  2SPG A;  3AME A;  3NLA A;  7AME A;  3FRN A;  1GZI A;  4UR6 A;  2AME A;  2ZDR A;  3G8R A;  1MSJ A;  1B7K A;  4NY6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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