8RDJH

Plastid-encoded rna polymerase transcription elongation complex (integrated model)
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
549
structure length
549
Chain Sequence
TEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIEAFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLDTSWAGPLVVRQIPPRDWPPKGWEVDRKELEFIREAHKLMAERVWLEDLDKDLKVGEDATVDKMCLERFKVFLKQYNEWVEANKDRLEEDSYKYDQDFYPGRRIRGKDYKEGMYELPFYYPGMICEGTVTTLHLYQGAFVDIGGVHEGWVPIKGNDWFWIRHFIRVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIFNKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQLHVAEQMILDDYEANPEKYKGKKLSELSDDEGFDERKEIEHGEAYYKKTKLPKVILKTSVKELDLEAALIERKYHNKLMMEAKARGEGYKIEKLRRNIEMDEYDSLHWRRSLEEREALLRDISSRQALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVGKGNVWYDMSYDDAIKQTIERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the plant plastid-encoded RNA polymerase.
pubmed doi rcsb
molecule tags Gene regulation
molecule keywords DNA-directed RNA polymerase subunit alpha
total genus 128
structure length 549
sequence length 549
ec nomenclature
pdb deposition date 2023-12-08
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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