8SKBA

Crystal structure of gdp-mannose 3,5 epimerase de myrciaria dubia in complex with nad
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
337
structure length
325
Chain Sequence
DYGAFTYENLEREPYWPSEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLGFENKNLPIHHIPGPVRGRNSDNTLIKEKLGWAPTMRLRDGLRITYFWIKEQIEKEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into the Smirnoff-Wheeler pathway for vitamin C production in the Amazon fruit Camu-Camu.
pubmed doi rcsb
molecule keywords GDP-mannose 3,5 epimerase
molecule tags Plant protein
source organism Myrciaria dubia
total genus 117
structure length 325
sequence length 337
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2023-04-19
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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