9JDWA

Crystal structure of human l-arginine:glycine amidinotransferase in complex with alpha-amino butyric acid
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE)
publication title The ligand-induced structural changes of human L-Arginine:Glycine amidinotransferase. A mutational and crystallographic study.
pubmed doi rcsb
source organism Homo sapiens
total genus 125
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1998-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 9jdwA00
3B1UA 1H70A 4N28A 1VKPA 1WD9A 2DW5A 1WDAA 2DEYX 4N2CA 3P8EA 2JDXA 3P8PA 3I4AA 3H7CX 5AK8A 3I2EA 4YTGA 5HP5A 2CI7A 4N2KA 3H7KA 4N2EA 1G61A 2CI1A 1JDXA 4N2HA 4N2DA 5M3QA 1S9RA 2CMUA 3APMA 3HVMA 1XKNA 2ABRA 5JDWA 4JDWA 3APNA 4N2MA 4N2LA 3BPBA 2CI5A 1WD8A 1LXYA 2CI4A 2JDWA 4N25A 6JDWA 8JDWA 4X8GA 2AAFA 2DEWX 4N24A 4N2GA 4N2BA 4YT9A 1ZBRA 2DEXX 1G62A 4N2IA 2JAJA 4N22A 4N20A 5AK7A 4N2AA 2C6ZA 2JAIA 7JDWA 4N26A 1JDWA 4BOFA 4X8CA 4E4JA 3JDWA 4N2FA 2ACIA 4N2NA 2A9GA 3B1TA 3RHYA 9JDWA 1RXXA 2CI3A 1BWDA 2CI6A 2Q3UA 5AN9I 4YTBA 4DKTA 2JERA 2EWOA
chains in the Genus database with same CATH superfamily
3B1UA 1YNIA 1H70A 4N28A 1VKPA 1WD9A 2DW5A 1WDAA 2DEYX 4N2CA 3P8EA 2JDXA 3P8PA 3I4AA 3H7CX 5AK8A 3I2EA 4YTGA 5HP5A 2CI7A 4N2KA 3H7KA 4N2EA 1G61A 2CI1A 1JDXA 4N2HA 4N2DA 5M3QA 1S9RA 1YNHA 2CMUA 3APMA 3HVMA 1XKNA 2ABRA 5JDWA 4JDWA 3APNA 4N2MA 4N2LA 3BPBA 2CI5A 1WD8A 1LXYA 2CI4A 2JDWA 4N25A 6JDWA 8JDWA 4X8GA 2AAFA 2DEWX 4N24A 4N2GA 4N2BA 4YT9A 1YNFA 1ZBRA 2DEXX 1G62A 4N2IA 2JAJA 4N22A 4N20A 5AK7A 4N2AA 2C6ZA 2JAIA 7JDWA 4N26A 1JDWA 4BOFA 4X8CA 4E4JA 3JDWA 4N2FA 2ACIA 4N2NA 2A9GA 3B1TA 3RHYA 9JDWA 1RXXA 2CI3A 1BWDA 2CI6A 2Q3UA 5AN9I 4YTBA 4DKTA 2JERA 2EWOA
chains in the Genus database with same CATH topology
3B1UA 1H70A 4N28A 1VKPA 1WD9A 2DW5A 1WDAA 2DEYX 4N2CA 3P8EA 2JDXA 3P8PA 3I4AA 3H7CX 5AK8A 3I2EA 4YTGA 5HP5A 2CI7A 4N2KA 3H7KA 4N2EA 1G61A 2CI1A 1JDXA 4N2HA 4N2DA 5M3QA 1S9RA 2CMUA 3APMA 3HVMA 1XKNA 2ABRA 5JDWA 4JDWA 3APNA 4N2MA 4N2LA 3BPBA 2CI5A 1WD8A 1LXYA 2CI4A 2JDWA 4N25A 6JDWA 8JDWA 4X8GA 2AAFA 2DEWX 4N24A 4N2GA 4N2BA 4YT9A 1ZBRA 2DEXX 1G62A 4N2IA 2JAJA 4N22A 4N20A 5AK7A 4N2AA 2C6ZA 2JAIA 7JDWA 4N26A 1JDWA 4BOFA 4X8CA 4E4JA 3JDWA 4N2FA 2ACIA 4N2NA 2A9GA 3B1TA 3RHYA 9JDWA 1RXXA 2CI3A 1BWDA 2CI6A 2Q3UA 5AN9I 4YTBA 4DKTA 2JERA 2EWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B1U A;  1H70 A;  4N28 A;  1VKP A;  1WD9 A;  2DW5 A;  1WDA A;  2DEY X;  4N2C A;  3P8E A;  2JDX A;  3P8P A;  3I4A A;  3H7C X;  5AK8 A;  3I2E A;  4YTG A;  5HP5 A;  2CI7 A;  4N2K A;  3H7K A;  4N2E A;  1G61 A;  2CI1 A;  1JDX A;  4N2H A;  4N2D A;  5M3Q A;  1S9R A;  2CMU A;  3APM A;  3HVM A;  1XKN A;  2ABR A;  5JDW A;  4JDW A;  3APN A;  4N2M A;  4N2L A;  3BPB A;  2CI5 A;  1WD8 A;  1LXY A;  2CI4 A;  2JDW A;  4N25 A;  6JDW A;  8JDW A;  4X8G A;  2AAF A;  2DEW X;  4N24 A;  4N2G A;  4N2B A;  4YT9 A;  1ZBR A;  2DEX X;  1G62 A;  4N2I A;  2JAJ A;  4N22 A;  4N20 A;  5AK7 A;  4N2A A;  2C6Z A;  2JAI A;  7JDW A;  4N26 A;  1JDW A;  4BOF A;  4X8C A;  4E4J A;  3JDW A;  4N2F A;  2ACI A;  4N2N A;  2A9G A;  3B1T A;  3RHY A;  9JDW A;  1RXX A;  2CI3 A;  1BWD A;  2CI6 A;  2Q3U A;  5AN9 I;  4YTB A;  4DKT A;  2JER A;  2EWO A; 
#chains in the Genus database with same CATH topology
 3B1U A;  1YNI A;  1H70 A;  4N28 A;  1VKP A;  1WD9 A;  2DW5 A;  1WDA A;  2DEY X;  4N2C A;  3P8E A;  2JDX A;  3P8P A;  3I4A A;  3H7C X;  5AK8 A;  3I2E A;  4YTG A;  5HP5 A;  2CI7 A;  4N2K A;  3H7K A;  4N2E A;  1G61 A;  2CI1 A;  1JDX A;  4N2H A;  4N2D A;  5M3Q A;  1S9R A;  1YNH A;  2CMU A;  3APM A;  3HVM A;  1XKN A;  2ABR A;  5JDW A;  4JDW A;  3APN A;  4N2M A;  4N2L A;  3BPB A;  2CI5 A;  1WD8 A;  1LXY A;  2CI4 A;  2JDW A;  4N25 A;  6JDW A;  8JDW A;  4X8G A;  2AAF A;  2DEW X;  4N24 A;  4N2G A;  4N2B A;  4YT9 A;  1YNF A;  1ZBR A;  2DEX X;  1G62 A;  4N2I A;  2JAJ A;  4N22 A;  4N20 A;  5AK7 A;  4N2A A;  2C6Z A;  2JAI A;  7JDW A;  4N26 A;  1JDW A;  4BOF A;  4X8C A;  4E4J A;  3JDW A;  4N2F A;  2ACI A;  4N2N A;  2A9G A;  3B1T A;  3RHY A;  9JDW A;  1RXX A;  2CI3 A;  1BWD A;  2CI6 A;  2Q3U A;  5AN9 I;  4YTB A;  4DKT A;  2JER A;  2EWO A; 
#chains in the Genus database with same CATH homology
 3B1U A;  1H70 A;  4N28 A;  1VKP A;  1WD9 A;  2DW5 A;  1WDA A;  2DEY X;  4N2C A;  3P8E A;  2JDX A;  3P8P A;  3I4A A;  3H7C X;  5AK8 A;  3I2E A;  4YTG A;  5HP5 A;  2CI7 A;  4N2K A;  3H7K A;  4N2E A;  1G61 A;  2CI1 A;  1JDX A;  4N2H A;  4N2D A;  5M3Q A;  1S9R A;  2CMU A;  3APM A;  3HVM A;  1XKN A;  2ABR A;  5JDW A;  4JDW A;  3APN A;  4N2M A;  4N2L A;  3BPB A;  2CI5 A;  1WD8 A;  1LXY A;  2CI4 A;  2JDW A;  4N25 A;  6JDW A;  8JDW A;  4X8G A;  2AAF A;  2DEW X;  4N24 A;  4N2G A;  4N2B A;  4YT9 A;  1ZBR A;  2DEX X;  1G62 A;  4N2I A;  2JAJ A;  4N22 A;  4N20 A;  5AK7 A;  4N2A A;  2C6Z A;  2JAI A;  7JDW A;  4N26 A;  1JDW A;  4BOF A;  4X8C A;  4E4J A;  3JDW A;  4N2F A;  2ACI A;  4N2N A;  2A9G A;  3B1T A;  3RHY A;  9JDW A;  1RXX A;  2CI3 A;  1BWD A;  2CI6 A;  2Q3U A;  5AN9 I;  4YTB A;  4DKT A;  2JER A;  2EWO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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