9MSIA

Type iii antifreeze protein isoform hplc 12 t18n
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
66
structure length
66
Chain Sequence
ANQASVVANQLIPINTALNLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVKGYAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords PROTEIN (ANTIFREEZE PROTEIN TYPE III)
publication title Quantitative and qualitative analysis of type III antifreeze protein structure and function.
pubmed doi rcsb
source organism Macrozoarces americanus
total genus 15
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1999-01-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1210.10 Alpha Beta Alpha-Beta Complex Type Iii Antifreeze Protein Isoform Hplc 12 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain 9msiA00
1AMEA 1XUUA 3MSIA 8MSIA 1KDEA 1B7IA 1C89A 8AMEA 2WQPA 2AMEA 4IPJA 2MSJA 3CM4A 1UCSA 2SPGA 7AMEA 1WVOA 1MSIA 3FRNA 3QF6A 1JABA 6AMEA 2MSIA 1MSJA 2JIAA 1B7KA 2ZDRA 1KDFA 7MSIA 9MSIA 1XUZA 3RDNA 4IPIA 3AMEA 1GZIA 1C8AA 4UR4A 4NY6A 4MSIA 1VLIA 6MSIA 3G8RA 1HG7A 4AMEA 1OPSA 2LX2A 3NLAA 4UR6A 1EKLA 5MSIA 9AMEA 1B7JA 2LX3A
chains in the Genus database with same CATH superfamily
1AMEA 1XUUA 3MSIA 8MSIA 1KDEA 1B7IA 1C89A 8AMEA 2WQPA 2AMEA 4IPJA 2MSJA 3CM4A 1UCSA 2SPGA 7AMEA 1WVOA 1MSIA 3FRNA 3QF6A 1JABA 6AMEA 2MSIA 1MSJA 2JIAA 1B7KA 2ZDRA 1KDFA 7MSIA 9MSIA 1XUZA 3RDNA 4IPIA 3AMEA 1GZIA 1C8AA 4UR4A 4NY6A 4MSIA 1VLIA 6MSIA 3G8RA 1HG7A 4AMEA 1OPSA 2LX2A 3NLAA 3K3SA 4UR6A 1EKLA 5MSIA 9AMEA 1B7JA 3LAZA 2LX3A
chains in the Genus database with same CATH topology
1AMEA 1XUUA 3MSIA 8MSIA 1KDEA 1B7IA 1C89A 8AMEA 2WQPA 2AMEA 4IPJA 2MSJA 3CM4A 1UCSA 2SPGA 7AMEA 1WVOA 1MSIA 3FRNA 3QF6A 1JABA 6AMEA 2MSIA 1MSJA 2JIAA 1B7KA 2ZDRA 1KDFA 7MSIA 9MSIA 1XUZA 3RDNA 4IPIA 3AMEA 1GZIA 1C8AA 4UR4A 4NY6A 4MSIA 1VLIA 6MSIA 3G8RA 1HG7A 4AMEA 1OPSA 2LX2A 3NLAA 4UR6A 1EKLA 5MSIA 9AMEA 1B7JA 2LX3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AME A;  1XUU A;  3MSI A;  8MSI A;  1KDE A;  1B7I A;  1C89 A;  8AME A;  2WQP A;  2AME A;  4IPJ A;  2MSJ A;  3CM4 A;  1UCS A;  2SPG A;  7AME A;  1WVO A;  1MSI A;  3FRN A;  3QF6 A;  1JAB A;  6AME A;  2MSI A;  1MSJ A;  2JIA A;  1B7K A;  2ZDR A;  1KDF A;  7MSI A;  9MSI A;  1XUZ A;  3RDN A;  4IPI A;  3AME A;  1GZI A;  1C8A A;  4UR4 A;  4NY6 A;  4MSI A;  1VLI A;  6MSI A;  3G8R A;  1HG7 A;  4AME A;  1OPS A;  2LX2 A;  3NLA A;  4UR6 A;  1EKL A;  5MSI A;  9AME A;  1B7J A;  2LX3 A; 
#chains in the Genus database with same CATH topology
 1AME A;  1XUU A;  3MSI A;  8MSI A;  1KDE A;  1B7I A;  1C89 A;  8AME A;  2WQP A;  2AME A;  4IPJ A;  2MSJ A;  3CM4 A;  1UCS A;  2SPG A;  7AME A;  1WVO A;  1MSI A;  3FRN A;  3QF6 A;  1JAB A;  6AME A;  2MSI A;  1MSJ A;  2JIA A;  1B7K A;  2ZDR A;  1KDF A;  7MSI A;  9MSI A;  1XUZ A;  3RDN A;  4IPI A;  3AME A;  1GZI A;  1C8A A;  4UR4 A;  4NY6 A;  4MSI A;  1VLI A;  6MSI A;  3G8R A;  1HG7 A;  4AME A;  1OPS A;  2LX2 A;  3NLA A;  3K3S A;  4UR6 A;  1EKL A;  5MSI A;  9AME A;  1B7J A;  3LAZ A;  2LX3 A; 
#chains in the Genus database with same CATH homology
 1AME A;  1XUU A;  3MSI A;  8MSI A;  1KDE A;  1B7I A;  1C89 A;  8AME A;  2WQP A;  2AME A;  4IPJ A;  2MSJ A;  3CM4 A;  1UCS A;  2SPG A;  7AME A;  1WVO A;  1MSI A;  3FRN A;  3QF6 A;  1JAB A;  6AME A;  2MSI A;  1MSJ A;  2JIA A;  1B7K A;  2ZDR A;  1KDF A;  7MSI A;  9MSI A;  1XUZ A;  3RDN A;  4IPI A;  3AME A;  1GZI A;  1C8A A;  4UR4 A;  4NY6 A;  4MSI A;  1VLI A;  6MSI A;  3G8R A;  1HG7 A;  4AME A;  1OPS A;  2LX2 A;  3NLA A;  4UR6 A;  1EKL A;  5MSI A;  9AME A;  1B7J A;  2LX3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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