1AZ3A

Ecorv endonuclease, unliganded, form b
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
216
structure length
186
Chain Sequence
SLRSDLINYDVCGIISAEGKIYPLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTENEKKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVKTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGNIGSIHAHYKDFVEGKGIFDSEDEFLDYWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endonuclease
molecule keywords ECORV ENDONUCLEASE
publication title Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis.
pubmed doi rcsb
total genus 43
structure length 186
sequence length 216
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1997-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09233 Endonuc-EcoRV Restriction endonuclease EcoRV
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 1az3A00
1BSSA 1BGBA 2B0DA 1EV7A 4PXGA 1BSUA 1EONA 1AZOA 1AZ4A 1EOPA 2GE5A 1EO4A 2B0EA 1AZ3A 5F8AA 1SX5A 3E43A 2AORA 1SUZA 1TX3A 3E41A 3EBCA 1B97A 1STXA 1IAWA 1XHVA 1XHUA 1EOOA 4RVEA 1RV5A 2GIJA 2RVEA 2GIEA 3E45A 1BUAA 2AOQA 1TW8A 5HLKA 3E40A 3E42A 1EO3A 1RVAA 1RVBA 2GIHA 2GIGA 1AZ0A 2AUDA 2GIIA 3E44A 1B95A 2AZOA 1RVEA 3E3YA 1SX8A 1KC6A 1B96A 2REUA 1B94A 1RVCA
chains in the Genus database with same CATH superfamily
1BSSA 1BGBA 2B0DA 1EV7A 4PXGA 1BSUA 1EONA 1AZOA 1AZ4A 1EOPA 2GE5A 1EO4A 2B0EA 1AZ3A 5F8AA 1SX5A 3E43A 2AORA 1SUZA 3NDHA 1DMUA 1TX3A 3E41A 2EZVA 3EBCA 1B97A 1STXA 1IAWA 1XHVA 1XHUA 1EOOA 4RVEA 1RV5A 2GIJA 2RVEA 2GIEA 3E45A 1BUAA 2AOQA 1TW8A 5HLKA 3E40A 3E42A 1EO3A 1RVAA 1RVBA 2F03A 2GIGA 1AZ0A 2AUDA 2GIIA 3E44A 1B95A 2AZOA 1RVEA 3E3YA 1SX8A 1KC6A 2GIHA 1B96A 2REUA 1B94A 1RVCA
chains in the Genus database with same CATH topology
1BSSA 1BGBA 2B0DA 1EV7A 4PXGA 1BSUA 1EONA 1AZOA 1AZ4A 1EOPA 2GE5A 1EO4A 2B0EA 1AZ3A 5F8AA 1SX5A 3E43A 2AORA 1SUZA 1TX3A 3E41A 3EBCA 1B97A 1STXA 1IAWA 1XHVA 1XHUA 1EOOA 4RVEA 1RV5A 2GIJA 2RVEA 2GIEA 3E45A 1BUAA 2AOQA 1TW8A 5HLKA 3E40A 3E42A 1EO3A 1RVAA 1RVBA 2GIHA 2GIGA 1AZ0A 2AUDA 2GIIA 3E44A 1B95A 2AZOA 1RVEA 3E3YA 1SX8A 1KC6A 1B96A 2REUA 1B94A 1RVCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BSS A;  1BGB A;  2B0D A;  1EV7 A;  4PXG A;  1BSU A;  1EON A;  1AZO A;  1AZ4 A;  1EOP A;  2GE5 A;  1EO4 A;  2B0E A;  1AZ3 A;  5F8A A;  1SX5 A;  3E43 A;  2AOR A;  1SUZ A;  1TX3 A;  3E41 A;  3EBC A;  1B97 A;  1STX A;  1IAW A;  1XHV A;  1XHU A;  1EOO A;  4RVE A;  1RV5 A;  2GIJ A;  2RVE A;  2GIE A;  3E45 A;  1BUA A;  2AOQ A;  1TW8 A;  5HLK A;  3E40 A;  3E42 A;  1EO3 A;  1RVA A;  1RVB A;  2GIH A;  2GIG A;  1AZ0 A;  2AUD A;  2GII A;  3E44 A;  1B95 A;  2AZO A;  1RVE A;  3E3Y A;  1SX8 A;  1KC6 A;  1B96 A;  2REU A;  1B94 A;  1RVC A; 
#chains in the Genus database with same CATH topology
 1BSS A;  1BGB A;  2B0D A;  1EV7 A;  4PXG A;  1BSU A;  1EON A;  1AZO A;  1AZ4 A;  1EOP A;  2GE5 A;  1EO4 A;  2B0E A;  1AZ3 A;  5F8A A;  1SX5 A;  3E43 A;  2AOR A;  1SUZ A;  3NDH A;  1DMU A;  1TX3 A;  3E41 A;  2EZV A;  3EBC A;  1B97 A;  1STX A;  1IAW A;  1XHV A;  1XHU A;  1EOO A;  4RVE A;  1RV5 A;  2GIJ A;  2RVE A;  2GIE A;  3E45 A;  1BUA A;  2AOQ A;  1TW8 A;  5HLK A;  3E40 A;  3E42 A;  1EO3 A;  1RVA A;  1RVB A;  2F03 A;  2GIG A;  1AZ0 A;  2AUD A;  2GII A;  3E44 A;  1B95 A;  2AZO A;  1RVE A;  3E3Y A;  1SX8 A;  1KC6 A;  2GIH A;  1B96 A;  2REU A;  1B94 A;  1RVC A; 
#chains in the Genus database with same CATH homology
 1BSS A;  1BGB A;  2B0D A;  1EV7 A;  4PXG A;  1BSU A;  1EON A;  1AZO A;  1AZ4 A;  1EOP A;  2GE5 A;  1EO4 A;  2B0E A;  1AZ3 A;  5F8A A;  1SX5 A;  3E43 A;  2AOR A;  1SUZ A;  1TX3 A;  3E41 A;  3EBC A;  1B97 A;  1STX A;  1IAW A;  1XHV A;  1XHU A;  1EOO A;  4RVE A;  1RV5 A;  2GIJ A;  2RVE A;  2GIE A;  3E45 A;  1BUA A;  2AOQ A;  1TW8 A;  5HLK A;  3E40 A;  3E42 A;  1EO3 A;  1RVA A;  1RVB A;  2GIH A;  2GIG A;  1AZ0 A;  2AUD A;  2GII A;  3E44 A;  1B95 A;  2AZO A;  1RVE A;  3E3Y A;  1SX8 A;  1KC6 A;  1B96 A;  2REU A;  1B94 A;  1RVC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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