1BVBA

Heme-packing motifs revealed by the crystal structure of cytochrome c554 from nitrosomonas europaea
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
211
structure length
211
Chain Sequence
ADAPFEGRKKCSSCHKAQAQSWKDTAHAKAMESLKPNVKKEAKQKAKLDPAKDYTQDKDCVGCHVDGFGQKGGYTIESPKPMLTGVGCESCHGPGRNFRGDHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEERCSACHLNYEGSPWKGAKAPYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFEGEPKFKFHDEFQASAKPAKKGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C-554
publication title Heme packing motifs revealed by the crystal structure of the tetra-heme cytochrome c554 from Nitrosomonas europaea.
pubmed doi rcsb
total genus 47
structure length 211
sequence length 211
ec nomenclature
pdb deposition date 1998-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13435 Cytochrome_C554 Cytochrome c554 and c-prime
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1130.10 Mainly Alpha Orthogonal Bundle Flavocytochrome C3; Chain A, domain 2 Flavocytochrome C3; Chain A 1bvbA00
1FS9A 1P2HA 1D4EA 2B7RA 1QO8A 1KSSA 4Q5BA 2ZO5A 3SXQA 1E39A 1Y0PA 2E81A 4L3YA 2VR0A 3SCEA 1FT5A 3UBRA 4L38A 3BNJA 1FS7A 4Q5CA 1GU6A 1P2EA 3TTBA 1M1PA 3D1IA 2K3VA 1Q9IA 3S7WA 1JRZA 1SP3A 3BNGA 4Q1OA 3UU9A 4Q4UA 4L3ZA 1JNIA 1QJDA 3MMOA 1LJ1A 3OWMA 4Q17A 1BVBA 1JRXA 2RDZA 3BNHA 3RKHA 2RF7A 4L3XA 3BNFA 1M1RA 1JRYA 2E80A 1M1QA 4Q0TA 3TORA 1D4CA 3L1TA 1KSUA 1M64A 2OT4A 1FS8A 2J7AA 3LG1A 3LGQA 2B7SA 1FT6A 3F29A 1D4DA 1OAHA 3GM6A 4WJYA 3FO3A 1QDBA
chains in the Genus database with same CATH superfamily
1FS9A 1P2HA 1D4EA 2B7RA 1QO8A 1KSSA 4Q5BA 2ZO5A 3SXQA 1E39A 1Y0PA 2E81A 4L3YA 2VR0A 3SCEA 1FT5A 3UBRA 4L38A 3BNJA 1FS7A 4Q5CA 1GU6A 1P2EA 3TTBA 1M1PA 3D1IA 2K3VA 1Q9IA 3S7WA 1JRZA 1SP3A 3BNGA 4Q1OA 3UU9A 4Q4UA 4L3ZA 1JNIA 1QJDA 3MMOA 1LJ1A 3OWMA 4Q17A 1BVBA 1JRXA 2RDZA 3BNHA 3RKHA 2RF7A 4L3XA 2CZSA 3BNFA 1M1RA 1JRYA 2E80A 1M1QA 4Q0TA 3TORA 1D4CA 3L1TA 1KSUA 1M64A 2OT4A 1FS8A 2J7AA 3LG1A 3LGQA 2B7SA 1FT6A 3F29A 1D4DA 1OAHA 3GM6A 4WJYA 3FO3A 1QDBA
chains in the Genus database with same CATH topology
1FS9A 1P2HA 1D4EA 2B7RA 1QO8A 1KSSA 4Q5BA 2ZO5A 3SXQA 1E39A 1Y0PA 2E81A 4L3YA 2VR0A 3SCEA 1FT5A 3UBRA 4L38A 3BNJA 1FS7A 4Q5CA 1GU6A 1P2EA 3TTBA 1M1PA 3D1IA 2K3VA 1Q9IA 3S7WA 1JRZA 1SP3A 3BNGA 4Q1OA 3UU9A 4Q4UA 4L3ZA 1JNIA 1QJDA 3MMOA 1LJ1A 3OWMA 4Q17A 1BVBA 1JRXA 2RDZA 3BNHA 3RKHA 2RF7A 4L3XA 3BNFA 1M1RA 1JRYA 2E80A 1M1QA 4Q0TA 3TORA 1D4CA 3L1TA 1KSUA 1M64A 2OT4A 1FS8A 2J7AA 3LG1A 3LGQA 2B7SA 1FT6A 3F29A 1D4DA 1OAHA 3GM6A 4WJYA 3FO3A 1QDBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS9 A;  1P2H A;  1D4E A;  2B7R A;  1QO8 A;  1KSS A;  4Q5B A;  2ZO5 A;  3SXQ A;  1E39 A;  1Y0P A;  2E81 A;  4L3Y A;  2VR0 A;  3SCE A;  1FT5 A;  3UBR A;  4L38 A;  3BNJ A;  1FS7 A;  4Q5C A;  1GU6 A;  1P2E A;  3TTB A;  1M1P A;  3D1I A;  2K3V A;  1Q9I A;  3S7W A;  1JRZ A;  1SP3 A;  3BNG A;  4Q1O A;  3UU9 A;  4Q4U A;  4L3Z A;  1JNI A;  1QJD A;  3MMO A;  1LJ1 A;  3OWM A;  4Q17 A;  1BVB A;  1JRX A;  2RDZ A;  3BNH A;  3RKH A;  2RF7 A;  4L3X A;  3BNF A;  1M1R A;  1JRY A;  2E80 A;  1M1Q A;  4Q0T A;  3TOR A;  1D4C A;  3L1T A;  1KSU A;  1M64 A;  2OT4 A;  1FS8 A;  2J7A A;  3LG1 A;  3LGQ A;  2B7S A;  1FT6 A;  3F29 A;  1D4D A;  1OAH A;  3GM6 A;  4WJY A;  3FO3 A;  1QDB A; 
#chains in the Genus database with same CATH topology
 1FS9 A;  1P2H A;  1D4E A;  2B7R A;  1QO8 A;  1KSS A;  4Q5B A;  2ZO5 A;  3SXQ A;  1E39 A;  1Y0P A;  2E81 A;  4L3Y A;  2VR0 A;  3SCE A;  1FT5 A;  3UBR A;  4L38 A;  3BNJ A;  1FS7 A;  4Q5C A;  1GU6 A;  1P2E A;  3TTB A;  1M1P A;  3D1I A;  2K3V A;  1Q9I A;  3S7W A;  1JRZ A;  1SP3 A;  3BNG A;  4Q1O A;  3UU9 A;  4Q4U A;  4L3Z A;  1JNI A;  1QJD A;  3MMO A;  1LJ1 A;  3OWM A;  4Q17 A;  1BVB A;  1JRX A;  2RDZ A;  3BNH A;  3RKH A;  2RF7 A;  4L3X A;  2CZS A;  3BNF A;  1M1R A;  1JRY A;  2E80 A;  1M1Q A;  4Q0T A;  3TOR A;  1D4C A;  3L1T A;  1KSU A;  1M64 A;  2OT4 A;  1FS8 A;  2J7A A;  3LG1 A;  3LGQ A;  2B7S A;  1FT6 A;  3F29 A;  1D4D A;  1OAH A;  3GM6 A;  4WJY A;  3FO3 A;  1QDB A; 
#chains in the Genus database with same CATH homology
 1FS9 A;  1P2H A;  1D4E A;  2B7R A;  1QO8 A;  1KSS A;  4Q5B A;  2ZO5 A;  3SXQ A;  1E39 A;  1Y0P A;  2E81 A;  4L3Y A;  2VR0 A;  3SCE A;  1FT5 A;  3UBR A;  4L38 A;  3BNJ A;  1FS7 A;  4Q5C A;  1GU6 A;  1P2E A;  3TTB A;  1M1P A;  3D1I A;  2K3V A;  1Q9I A;  3S7W A;  1JRZ A;  1SP3 A;  3BNG A;  4Q1O A;  3UU9 A;  4Q4U A;  4L3Z A;  1JNI A;  1QJD A;  3MMO A;  1LJ1 A;  3OWM A;  4Q17 A;  1BVB A;  1JRX A;  2RDZ A;  3BNH A;  3RKH A;  2RF7 A;  4L3X A;  3BNF A;  1M1R A;  1JRY A;  2E80 A;  1M1Q A;  4Q0T A;  3TOR A;  1D4C A;  3L1T A;  1KSU A;  1M64 A;  2OT4 A;  1FS8 A;  2J7A A;  3LG1 A;  3LGQ A;  2B7S A;  1FT6 A;  3F29 A;  1D4D A;  1OAH A;  3GM6 A;  4WJY A;  3FO3 A;  1QDB A; 
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similar chains in the pdb database (?% sequence similarity)

 
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