1JH3A

Solution structure of tyrosyl-trna synthetase c-terminal domain.
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
99
structure length
99
Chain Sequence
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIRYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Ligase
molecule keywords TYROSYL-TRNA SYNTHETASE
publication title Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 22
structure length 99
sequence length 99
ec nomenclature ec 6.1.1.1: Tyrosine--tRNA ligase.
pdb deposition date 2001-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1jh3A00
2ISTA 4NXND 3KBGA 3T1HD 2UXBD 4LF6D 2UUCD 4JI8D 1XMOD 2VQFD 5LMUD 4AQYD 4DV3D 4B3TD 1HR0D 4X66D 4OUDA 1KSVA 1XNQD 1IBKD 4DR3D 1H3EA 4JYAD 2UUAD 4DR2D 1HNXD 4B3RD 4LFCD 4LFAD 4DV0D 4JI7D 2VQED 4JI3D 2JANA 2UUBD 2E5LD 4X62D 2UU9D 4NXMD 2F4VD 4LGTA 1XMQD 4JI4D 1P9KA 4DV6D 3T1YD 4DR6D 4LFBD 3DH3A 4DV2D 4LF4D 5BR8D 4X65D 2UXCD 1DM9A 4DV5D 1N33D 4DR4D 2K6PA 4DV7D 4DR7D 4K0KD 1IBMD 1I94D 4DV4D 1J5ED 5IWAD 4DUZD 4DUYD 3HP7A 2UXDD 4DV1D 1IBLD 4GKJD 1H3FA 4GKKD 4KHPD 4DR1D 1XNRD 4JI2D 4B3MD 1KSKA 1N36D 1C06A 4LF5D 2KTLA 4LF9D 4JV5D 4YHHD 4JI1D 3OTOD 4B3SD 1N32D 4YY3D 4OX9D 2ZM6D 4JI6D 4JI5D 1KSLA 1HNZD 4JI0D 1N34D 5LMND 1VIOA 4LF8D 1C05A 4DR5D 4LF7D 1HNWD 1JH3A 1FJGD 1FKAD 2HHHD 4X64D
chains in the Genus database with same CATH superfamily
2ISTA 5FQ2B 4NXND 3KBGA 3T1HD 2UXBD 4LF6D 2UUCD 4JI8D 1XMOD 2VQFD 5LMUD 4AQYD 4DV3D 1Y8QB 1Y8XB 5FLXE 3J81E 4B3TD 2NVUB 1HR0D 4X66D 4OUDA 1KSVA 1XNQD 2I1SA 1IBKD 4DR3D 4W5VB 1H3EA 4JYAD 3J7AF 2UUAD 4DR2D 1HNXD 4B3RD 4LFCD 4LFAD 4DV0D 4JI7D 2VQED 4JI3D 2JANA 2LQ7A 2E5LD 2UUBD 4X62D 2UU9D 4NXMD 2F4VD 4LGTA 1XMQD 4JI4D 1P9KA 4DV6D 3T1YD 4DR6D 4LFBD 4DV2D 3DH3A 3ONHA 4II3A 4LF4D 5BR8D 4X65D 2UXCD 1DM9A 4DV5D 1N33D 4DR4D 2K6PA 3ONGA 4DV7D 4DR7D 4K0KD 1IBMD 1I94D 4DV4D 1J5ED 5IWAD 4DUZD 4DUYD 2ZTBA 3HP7A 2UXDD 4DV1D 1IBLD 4GKJD 1H3FA 4GKKD 4KHPD 3JAME 4DR1D 5LL6S 4II2A 1XNRD 4JI2D 4B3MD 1KSKA 1N36D 1C06A 4LF5D 2KTLA 4LF9D 4JV5D 4YHHD 4JI1D 3KYDB 3OTOD 4B3SD 3CMMA 1N32D 4YY3D 3J80E 4OX9D 3FN1A 4NNJA 2ZM6D 4JI6D 4JI5D 1KSLA 5KNLA 1HNZD 5IT9E 4JI0D 1N34D 3KYCB 1Y8RB 5LMND 1VIOA 4LF8D 1C05A 4DR5D 4LF7D 5A2QE 1HNWD 1JH3A 1FJGD 1FKAD 2HHHD 4X64D
chains in the Genus database with same CATH topology
2ISTA 4NXND 3KBGA 3T1HD 2UXBD 4LF6D 2UUCD 4JI8D 1XMOD 2VQFD 5LMUD 4AQYD 4DV3D 4B3TD 1HR0D 4X66D 4OUDA 1KSVA 1XNQD 1IBKD 4DR3D 1H3EA 4JYAD 2UUAD 4DR2D 1HNXD 4B3RD 4LFCD 4LFAD 4DV0D 4JI7D 2VQED 4JI3D 2JANA 2UUBD 2E5LD 4X62D 2UU9D 4NXMD 2F4VD 4LGTA 1XMQD 4JI4D 1P9KA 4DV6D 3T1YD 4DR6D 4LFBD 3DH3A 4DV2D 4LF4D 5BR8D 4X65D 2UXCD 1DM9A 4DV5D 1N33D 4DR4D 2K6PA 4DV7D 4DR7D 4K0KD 1IBMD 1I94D 4DV4D 1J5ED 5IWAD 4DUZD 4DUYD 3HP7A 2UXDD 4DV1D 1IBLD 4GKJD 1H3FA 4GKKD 4KHPD 4DR1D 1XNRD 4JI2D 4B3MD 1KSKA 1N36D 1C06A 4LF5D 2KTLA 4LF9D 4JV5D 4YHHD 4JI1D 3OTOD 4B3SD 1N32D 4YY3D 4OX9D 2ZM6D 4JI6D 4JI5D 1KSLA 1HNZD 4JI0D 1N34D 5LMND 1VIOA 4LF8D 1C05A 4DR5D 4LF7D 1HNWD 1JH3A 1FJGD 1FKAD 2HHHD 4X64D
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2IST A;  4NXN D;  3KBG A;  3T1H D;  2UXB D;  4LF6 D;  2UUC D;  4JI8 D;  1XMO D;  2VQF D;  5LMU D;  4AQY D;  4DV3 D;  4B3T D;  1HR0 D;  4X66 D;  4OUD A;  1KSV A;  1XNQ D;  1IBK D;  4DR3 D;  1H3E A;  4JYA D;  2UUA D;  4DR2 D;  1HNX D;  4B3R D;  4LFC D;  4LFA D;  4DV0 D;  4JI7 D;  2VQE D;  4JI3 D;  2JAN A;  2UUB D;  2E5L D;  4X62 D;  2UU9 D;  4NXM D;  2F4V D;  4LGT A;  1XMQ D;  4JI4 D;  1P9K A;  4DV6 D;  3T1Y D;  4DR6 D;  4LFB D;  3DH3 A;  4DV2 D;  4LF4 D;  5BR8 D;  4X65 D;  2UXC D;  1DM9 A;  4DV5 D;  1N33 D;  4DR4 D;  2K6P A;  4DV7 D;  4DR7 D;  4K0K D;  1IBM D;  1I94 D;  4DV4 D;  1J5E D;  5IWA D;  4DUZ D;  4DUY D;  3HP7 A;  2UXD D;  4DV1 D;  1IBL D;  4GKJ D;  1H3F A;  4GKK D;  4KHP D;  4DR1 D;  1XNR D;  4JI2 D;  4B3M D;  1KSK A;  1N36 D;  1C06 A;  4LF5 D;  2KTL A;  4LF9 D;  4JV5 D;  4YHH D;  4JI1 D;  3OTO D;  4B3S D;  1N32 D;  4YY3 D;  4OX9 D;  2ZM6 D;  4JI6 D;  4JI5 D;  1KSL A;  1HNZ D;  4JI0 D;  1N34 D;  5LMN D;  1VIO A;  4LF8 D;  1C05 A;  4DR5 D;  4LF7 D;  1HNW D;  1JH3 A;  1FJG D;  1FKA D;  2HHH D;  4X64 D; 
#chains in the Genus database with same CATH topology
 2IST A;  5FQ2 B;  4NXN D;  3KBG A;  3T1H D;  2UXB D;  4LF6 D;  2UUC D;  4JI8 D;  1XMO D;  2VQF D;  5LMU D;  4AQY D;  4DV3 D;  1Y8Q B;  1Y8X B;  5FLX E;  3J81 E;  4B3T D;  2NVU B;  1HR0 D;  4X66 D;  4OUD A;  1KSV A;  1XNQ D;  2I1S A;  1IBK D;  4DR3 D;  4W5V B;  1H3E A;  4JYA D;  3J7A F;  2UUA D;  4DR2 D;  1HNX D;  4B3R D;  4LFC D;  4LFA D;  4DV0 D;  4JI7 D;  2VQE D;  4JI3 D;  2JAN A;  2LQ7 A;  2E5L D;  2UUB D;  4X62 D;  2UU9 D;  4NXM D;  2F4V D;  4LGT A;  1XMQ D;  4JI4 D;  1P9K A;  4DV6 D;  3T1Y D;  4DR6 D;  4LFB D;  4DV2 D;  3DH3 A;  3ONH A;  4II3 A;  4LF4 D;  5BR8 D;  4X65 D;  2UXC D;  1DM9 A;  4DV5 D;  1N33 D;  4DR4 D;  2K6P A;  3ONG A;  4DV7 D;  4DR7 D;  4K0K D;  1IBM D;  1I94 D;  4DV4 D;  1J5E D;  5IWA D;  4DUZ D;  4DUY D;  2ZTB A;  3HP7 A;  2UXD D;  4DV1 D;  1IBL D;  4GKJ D;  1H3F A;  4GKK D;  4KHP D;  3JAM E;  4DR1 D;  5LL6 S;  4II2 A;  1XNR D;  4JI2 D;  4B3M D;  1KSK A;  1N36 D;  1C06 A;  4LF5 D;  2KTL A;  4LF9 D;  4JV5 D;  4YHH D;  4JI1 D;  3KYD B;  3OTO D;  4B3S D;  3CMM A;  1N32 D;  4YY3 D;  3J80 E;  4OX9 D;  3FN1 A;  4NNJ A;  2ZM6 D;  4JI6 D;  4JI5 D;  1KSL A;  5KNL A;  1HNZ D;  5IT9 E;  4JI0 D;  1N34 D;  3KYC B;  1Y8R B;  5LMN D;  1VIO A;  4LF8 D;  1C05 A;  4DR5 D;  4LF7 D;  5A2Q E;  1HNW D;  1JH3 A;  1FJG D;  1FKA D;  2HHH D;  4X64 D; 
#chains in the Genus database with same CATH homology
 2IST A;  4NXN D;  3KBG A;  3T1H D;  2UXB D;  4LF6 D;  2UUC D;  4JI8 D;  1XMO D;  2VQF D;  5LMU D;  4AQY D;  4DV3 D;  4B3T D;  1HR0 D;  4X66 D;  4OUD A;  1KSV A;  1XNQ D;  1IBK D;  4DR3 D;  1H3E A;  4JYA D;  2UUA D;  4DR2 D;  1HNX D;  4B3R D;  4LFC D;  4LFA D;  4DV0 D;  4JI7 D;  2VQE D;  4JI3 D;  2JAN A;  2UUB D;  2E5L D;  4X62 D;  2UU9 D;  4NXM D;  2F4V D;  4LGT A;  1XMQ D;  4JI4 D;  1P9K A;  4DV6 D;  3T1Y D;  4DR6 D;  4LFB D;  3DH3 A;  4DV2 D;  4LF4 D;  5BR8 D;  4X65 D;  2UXC D;  1DM9 A;  4DV5 D;  1N33 D;  4DR4 D;  2K6P A;  4DV7 D;  4DR7 D;  4K0K D;  1IBM D;  1I94 D;  4DV4 D;  1J5E D;  5IWA D;  4DUZ D;  4DUY D;  3HP7 A;  2UXD D;  4DV1 D;  1IBL D;  4GKJ D;  1H3F A;  4GKK D;  4KHP D;  4DR1 D;  1XNR D;  4JI2 D;  4B3M D;  1KSK A;  1N36 D;  1C06 A;  4LF5 D;  2KTL A;  4LF9 D;  4JV5 D;  4YHH D;  4JI1 D;  3OTO D;  4B3S D;  1N32 D;  4YY3 D;  4OX9 D;  2ZM6 D;  4JI6 D;  4JI5 D;  1KSL A;  1HNZ D;  4JI0 D;  1N34 D;  5LMN D;  1VIO A;  4LF8 D;  1C05 A;  4DR5 D;  4LF7 D;  1HNW D;  1JH3 A;  1FJG D;  1FKA D;  2HHH D;  4X64 D;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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