1KD6A

Solution structure of the eukaryotic pore-forming cytolysin equinatoxin ii
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
179
structure length
179
Chain Sequence
SADVAGAVIDGASLSFDILKTVLEALGNVKRKIAVGVDNESGKTWTALNTYFRSGTSDIVLPHKVPHGKALLYNGQKDRGPVATGAVGVLAYLMSDGNTLAVLFSVPYDYNWYSNWWNVRIYKGKRRADQRMYEELYYNLSPFRGDNGWHTRNLGYGLKSRGFMNSSGHAILEIHVTKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords EQUINATOXIN II
publication title Solution structure of the eukaryotic pore-forming cytolysin equinatoxin II: implications for pore formation.
pubmed doi rcsb
source organism Actinia equina
total genus 25
structure length 179
sequence length 179
ec nomenclature
pdb deposition date 2001-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06369 Anemone_cytotox Sea anemone cytotoxic protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.270.20 Mainly Beta Sandwich Mutm (Fpg) Protein; Chain: A, domain 2 Cytolysin/lectin 1kd6A00
2OFEA 4WDCA 3ZWJA 3QDUA 3QDYA 3LIMA 2OFCA 2L38A 3QDXA 4Z2FA 1XI0A 1IAZA 3W9PA 4Z2SA 3QDVA 1X99A 4Z2QA 1Y2UA 4TSLA 1TZQA 1GWYA 4TSPA 4TSQA 2OFDA 3QDSA 3ZWGA 1O71A 4TSYA 1Y2WA 4TSOA 1Y2VA 1Y2XA 1Y2TA 3QDTA 3QDWA 3VWIA 4TSNA 1O72A 2L2BA 4YLDA 2KS4A 1KD6A 5BPGA
chains in the Genus database with same CATH superfamily
2OFEA 4WDCA 3ZWJA 3QDUA 4JOXA 3QDYA 3LIMA 2OFCA 2L38A 3QDXA 4Z2FA 1XI0A 4WX3A 1IAZA 3W9PA 4Z2SA 3QDVA 1X99A 4OEBA 4Z2QA 1Y2UA 4TSLA 1TZQA 1GWYA 4TSPA 4WX5A 4TSQA 2OFDA 3QDSA 3ZWGA 1O71A 4TSYA 1Y2WA 4TSOA 1Y2VA 1Y2XA 1Y2TA 3A57A 4HPQB 3QDTA 4P1WB 5JHFB 3QDWA 3VWIA 4TSNA 1O72A 2L2BA 4YLDA 2KS4A 1KD6A 5BPGA
chains in the Genus database with same CATH topology
2OFEA 4WDCA 3ZWJA 3QDUA 3QDYA 3LIMA 2OFCA 2L38A 3QDXA 4Z2FA 1XI0A 1IAZA 3W9PA 4Z2SA 3QDVA 1X99A 4Z2QA 1Y2UA 4TSLA 1TZQA 1GWYA 4TSPA 4TSQA 2OFDA 3QDSA 3ZWGA 1O71A 4TSYA 1Y2WA 4TSOA 1Y2VA 1Y2XA 1Y2TA 3QDTA 3QDWA 3VWIA 4TSNA 1O72A 2L2BA 4YLDA 2KS4A 1KD6A 5BPGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OFE A;  4WDC A;  3ZWJ A;  3QDU A;  3QDY A;  3LIM A;  2OFC A;  2L38 A;  3QDX A;  4Z2F A;  1XI0 A;  1IAZ A;  3W9P A;  4Z2S A;  3QDV A;  1X99 A;  4Z2Q A;  1Y2U A;  4TSL A;  1TZQ A;  1GWY A;  4TSP A;  4TSQ A;  2OFD A;  3QDS A;  3ZWG A;  1O71 A;  4TSY A;  1Y2W A;  4TSO A;  1Y2V A;  1Y2X A;  1Y2T A;  3QDT A;  3QDW A;  3VWI A;  4TSN A;  1O72 A;  2L2B A;  4YLD A;  2KS4 A;  1KD6 A;  5BPG A; 
#chains in the Genus database with same CATH topology
 2OFE A;  4WDC A;  3ZWJ A;  3QDU A;  4JOX A;  3QDY A;  3LIM A;  2OFC A;  2L38 A;  3QDX A;  4Z2F A;  1XI0 A;  4WX3 A;  1IAZ A;  3W9P A;  4Z2S A;  3QDV A;  1X99 A;  4OEB A;  4Z2Q A;  1Y2U A;  4TSL A;  1TZQ A;  1GWY A;  4TSP A;  4WX5 A;  4TSQ A;  2OFD A;  3QDS A;  3ZWG A;  1O71 A;  4TSY A;  1Y2W A;  4TSO A;  1Y2V A;  1Y2X A;  1Y2T A;  3A57 A;  4HPQ B;  3QDT A;  4P1W B;  5JHF B;  3QDW A;  3VWI A;  4TSN A;  1O72 A;  2L2B A;  4YLD A;  2KS4 A;  1KD6 A;  5BPG A; 
#chains in the Genus database with same CATH homology
 2OFE A;  4WDC A;  3ZWJ A;  3QDU A;  3QDY A;  3LIM A;  2OFC A;  2L38 A;  3QDX A;  4Z2F A;  1XI0 A;  1IAZ A;  3W9P A;  4Z2S A;  3QDV A;  1X99 A;  4Z2Q A;  1Y2U A;  4TSL A;  1TZQ A;  1GWY A;  4TSP A;  4TSQ A;  2OFD A;  3QDS A;  3ZWG A;  1O71 A;  4TSY A;  1Y2W A;  4TSO A;  1Y2V A;  1Y2X A;  1Y2T A;  3QDT A;  3QDW A;  3VWI A;  4TSN A;  1O72 A;  2L2B A;  4YLD A;  2KS4 A;  1KD6 A;  5BPG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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