The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
316
|
sequence length |
1056
|
structure length |
955
|
Chain Sequence |
EFQPGKVYRYSYDAFSISGLPEPGVNRAGLSGEMKIEIHGHTHNQATLKITQVNLKYFLGPWPSDSFYPLTGGYDHFIQQLEVPVRFDYSAGRIGDIYAPPQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQTTYVVQEGYRTNEMAVVKTKDLNNCDHKVYKTMGTAYAERCPTCQKMNKNLRSTAVYNYAIFDEPSGYIIKSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGIQSAPAASQAASLQNRGGLMYKFPSSAITKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLGSKLDRLGCRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEGLQELLYDWKSVPEERPLASGYVKVHGQEVVFAELDKKMQEQIGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADMKLADLLATNIELRVAATTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVVVLSTMESIVFVRDPSGSRILPVLPPKMTQKQIHDIMTARPVMRRKQSCSKSAALSSKVCFSARLRNAAFIRNALLYKITGDYVSKVYVQPTSSKAQITKVELELQAG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lipid binding protein
|
| molecule keywords |
LIPOVITELLIN (LV-1N, LV-1C)
|
| publication title |
Lipid-protein interactions in lipovitellin.
pubmed doi rcsb |
| total genus |
316
|
| structure length |
955
|
| sequence length |
1056
|
| ec nomenclature | |
| pdb deposition date | 2002-05-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01347 | Vitellogenin_N | Lipoprotein amino terminal region |
| A | PF09172 | DUF1943 | Domain of unknown function (DUF1943) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Vitellinogen, superhelical | ||
| Mainly Beta | Single Sheet | Outer Surface Protein A; domain 2 | Lipovitellin. Chain A, domain 3 | ||
| Mainly Beta | Single Sheet | Lipovitellin-phosvitin complex, chain A, domain 4 | Lipovitellin-phosvitin complex, chain A, domain 4 | ||
| Mainly Beta | Roll | Lipovitellin-phosvitin complex; beta-sheet shell regions | Lipovitellin; beta-sheet shell regions, chain A |
#chains in the Genus database with same CATH superfamily 1LSH A; #chains in the Genus database with same CATH topology 1UPK A; 3Q0M A; 4G3A A; 4H3K A; 3WOY A; 4R11 A; 3BX2 A; 2H4M A; 3FEY C; 2IW3 A; 3JXY A; 1UPL A; 3Q0O A; 5CLD A; 4I37 A; 2QNA A; 4WV6 A; 5CL9 A; 3K5Y A; 5DN7 A; 4B8J A; 2NPP B; 2BCT A; 3FEX C; 4D4E A; 4D49 A; 3LTM A; 4DB8 A; 3ZIN A; 3Q0L A; 4I2W A; 4RZP A; 4YK6 A; 4U5S A; 4JW3 C; 3ZIO A; 4A3T A; 3K7V A; 5AEI A; 3O4X A; 3BCT A; 4U5V A; 1XQR A; 5CLC A; 5BZU A; 2NPP A; 3ZIL A; 1QGK A; 5CL8 A; 3QHE A; 4E4V A; 2OT8 A; 3RZX A; 4PLQ A; 3K7W A; 4IMI A; 1BK6 A; 4LAC A; 1TE4 A; 4U5U A; 3JX7 A; 1V18 A; 3V71 A; 3L6X A; 5EKG A; 2JKR B; 5KUB A; 2BNX A; 1EJL I; 2C1T A; 4ZDU A; 4NZW A; 3QGC A; 4QMI A; 3KND A; 3GQ2 A; 4IMJ A; 2F31 A; 1M8Y A; 5HHG E; 1LSH B; 4CB9 A; 4UAE A; 3JY1 A; 3RZ9 A; 3BSX A; 4RV1 A; 4BPL A; 3C2G A; 3AU3 A; 2JKR A; 3UL0 B; 3O2Q A; 3Q0R A; 2Z5O A; 4JLQ A; 1QGR A; 3K49 A; 1LSH A; 4DB6 A; 3QML C; 4OIH A; 2IE4 A; 2JAK A; 4EVT A; 3O2T A; 5KL8 A; 3EA5 B; 4I7I A; 3NMW A; 5E6Q B; 3L6Y A; 1W63 B; 4V3R A; 5CLE A; 4FDD A; 3OUW A; 5CL5 A; 4HM9 A; 1IAL A; 3OQS A; 4UAF B; 1F59 A; 1HO8 A; 4GMO A; 4CT6 B; 4I8M A; 4FQ3 A; 1JDH A; 5KLR B; 3GAE A; 5CLA A; 2Z5N A; 4I3N A; 1W63 A; 2IX3 A; 3UKY B; 3K4E A; 3UJ0 A; 2Z5K A; 1LUJ A; 2Q5D A; 4I96 A; 2NYL B; 5H2W A; 2Z6G A; 4Y5J A; 2PF4 A; 4TNM A; 4U5O A; 4UAD A; 5BYM A; 3UJ4 A; 1O6O A; 1WA5 B; 3GNI A; 1XM9 A; 4R10 A; 3JXZ A; 4L4H A; 3LWW A; 5CL3 A; 2NYL A; 4CRU B; 4MZ5 E; 2QMR A; 4UWX A; 4I6I A; 3BX3 A; 3GVT A; 4A3V A; 5KL1 A; 3GB8 A; 3V6Y A; 3DAD A; 3TPO A; 3BSB A; 2VGL B; 4JW2 B; 4BQK A; 2OF3 A; 1M1E A; 4DVG B; 5B56 A; 4CB8 A; 2X1G F; 3Q0S A; 3TJZ B; 2GL7 A; 3EG5 B; 3WYF C; 4B8P A; 3K64 A; 3UL1 B; 2C1M A; 2VGL A; 4JW2 A; 4RXH B; 4KZG A; 3K5Q A; 1JPP A; 4I2Z A; 4CRV B; 4GMN A; 3K5Z A; 4YJE A; 2IE3 A; 4U5L A; 4H3H A; 4U3J C; 2YJY A; 5HUY C; 2BAP A; 3VLD A; 4EV8 A; 1GCJ A; 2YNR A; 1EJY I; 2P8Q A; 4I2S A; 3IFQ A; 3DW8 A; 5CLB A; 1Y2A C; 5H2X A; 3ODR A; 5J3V A; 3Q5U A; 3WOZ A; 2FV2 A; 3ZIP A; 3ND2 A; 1M8X A; 3UKZ B; 3BVS A; 3ODS A; 5SVZ A; 4DZS A; 5FC8 E; 2XOA A; 5JJA A; 1Q1S C; 4K92 A; 4O27 A; 5BZ5 A; 1I7X A; 2PKG A; 4B8O A; 4FFB C; 5EKF A; 3BWT A; 3QG9 A; 5SWF A; 3V74 A; 5BZV A; 2BKU B; 1IQ1 C; 4L4I A; 3EBB A; 2YNS A; 1OYZ A; 1IBR B; 3OBV A; 3WPT A; 1XQS A; 1M8W A; 2DB0 A; 2QK1 A; 4NEE A; 4YI0 C; 4U54 A; 4DBA A; 3L3F X; 4P6Z G; 4FZD A; 5EWP A; 3UKW B; 3Q0P A; 1N4K A; 3O2S A; 5LSW A; 2Z5J A; 4DB9 A; 3T7U A; 1Z2C B; 4R0Z A; 4DJS A; 3NMX A; 4V3Q A; 3PST A; 4QMJ A; 1I7W A; 4L7M A; 2X19 B; 3VLF A; 4U58 A; 3NMZ A; 3C2H A; 2IAE B; 3OUX A; 4ADY A; 1WA5 C; 5K9S A; 4V3O A; 3T8S A; 5K6S A; 4PLS A; 1B3U A; 3Q0N A; 3PSP A; 4BA3 A; 3VLE A; 3TT9 A; 5CL4 A; 3NOW A; 3BTR C; 4CBA A; 4P6Z B; 1PJN B; 4XZR B; 3OPB A; 4EVA A; 4I0Y A; 3Q0Q A; 2IAE A; 3IBV A; 1Q1T C; 3GS3 A; 2JDQ A; 3FGA B; 4PLR A; 3SLA A; 1G3J A; 5D5K C; 4QMH A; 1UKL A; 1M5N S; 1EE4 A; 2Z5M A; 2NYM B; 3VE6 A; 4MFV A; 4FZF A; 4I1E A; 2XA7 B; 5CL6 A; 1PJM B; 4A0C A; 3FGA A; 3C5W A; 2JKT B; 5CTT A; 5HUW C; 4EV9 A; 4U5N A; 1LRV A; 2W3C A; 2NYM A; 4CV5 B; 2WTK A; 5KLA A; 1TH1 A; 4JKQ A; 3TJ3 A; 3A6P A; 2IWH A; 2XA7 A; 3ZHP A; 3TPM A; 1BK5 A; 3LTJ A; 4OO6 A; 3QGB A; 2Z6H A; 2JKT A; 3H3D X; 4PVZ A; 3W3U A; 4U2X D; 1EE5 A; 3GRL A; 2RU4 B; 3TX7 A; 3UKX B; 4CT7 B; 3UVU A; 1O6P A; 4I5L A; 4HXT A; 1IB2 A; 5CL7 A; 2QK2 A; 4UQI B; 4K6J A; 3SL9 A; 5SW9 A; 4MZ6 E; 1M8Z A; 4YGX A; 4FP7 A; 3L3Q A; 2RU4 A; 3GVO A; 4YJL A; 1T08 A; 3K61 A; 1QZ7 A; 1QBK B; 3ZIR A; 5KLT B; 4UQI A; 4HNM A; 5BZ1 A; 1JPW A; 1UN0 A; 4MFU A; 3ZIQ A; 4FZA A; 4EVP A; 4B18 A; 3VWA A; 4HTV A; 1U6G C; 3ZKV A; 3K62 A; 1W9C A; 4I5N A; 3ZIK A; #chains in the Genus database with same CATH homology 1LSH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
