1N3EA

Crystal structure of i-crei bound to a palindromic dna sequence i (palindrome of left side of wildtype dna target sequence)
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
151
structure length
151
Chain Sequence
TKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3'
publication title Flexible DNA Target Site Recognition by Divergent Homing Endonuclease Isoschizomers I-CreI and I-MsoI
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 51
structure length 151
sequence length 151
chains with identical sequence B, G, H
ec nomenclature ec 3.1.-.-:
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1n3eA00
4AAFA 1B24A 5A0MA 4D6OA 1LWSA 2XE0B 4AAEA 1N3EA 1JVAA 4UN9A 3EH8A 5AK9A 4UN7G 3MIPA 3OOLA 2I3QA 4AADA 5AKFA 1U0DA 4EFJA 1G9YA 5A0MB 1UM2A 3C0WA 1M5XA 2VBOB 3QQYA 3HYJA 3UVFA 4YITA 2VS8A 1R7MA 5E63A 4UN8G 5A78A 4LOXA 1LWTA 3MISA 5E5OA 3MXBA 4AAGA 5AKNA 1N3FA 2AB5A 2FLDA 3FD2A 5AKMA 4Z1XA 1P8KZ 1MOWA 2CW7A 2VBJA 1U0CA 2VBNA 3E54A 3KO2A 2VBLA 1T9IA 5A72A 4UN9G 3R7PA 3C0XA 5A77A 3MXAA 2CW8A 1EF0A 4UT0A 2VBJB 2O7MA 2DCHX 4UNCA 2VBNB 2VBLB 1VDEA 4Z1ZA 4AQXA 4AQUA 4AABA 4UNAA 3OORA 5E67A 1DFAA 3MXBB 4LQ0A 4UN7A 1T9JA 2VBOA 1DQ3A 4Z20A 3MX9A 4UNBA 5A0WA 2QOJZ 4YHXA 2VS7A 3HYIA 1AF5A 4UN8A 1BP7A 2I3PA 4D6NA 5E5SA 2XE0A 5A74A 2EX5A 4YISA 1G9ZA
chains in the Genus database with same CATH superfamily
4AAFA 1B24A 5A0MA 4D6OA 1LWSA 2XE0B 4AAEA 1N3EA 1JVAA 4UN9A 3EH8A 5AK9A 2F4LA 4UN7G 3MIPA 3OOLA 2I3QA 4AADA 5AKFA 1U0DA 4EFJA 1G9YA 5A0MB 1UM2A 3C0WA 1M5XA 2VBOB 3QQYA 3HYJA 3UVFA 4YITA 2VS8A 1R7MA 5E63A 4UN8G 5A78A 4LOXA 1LWTA 3MISA 5E5OA 3MXBA 4AAGA 5AKNA 1N3FA 2AB5A 2FLDA 3FD2A 5AKMA 4Z1XA 1P8KZ 1MOWA 2CW7A 2VBJA 1U0CA 2VBNA 3E54A 3KO2A 2VBLA 1T9IA 5A72A 4UN9G 3R7PA 3C0XA 4KZSA 5A77A 3MXAA 2CW8A 1EF0A 4UT0A 2VBJB 2O7MA 2DCHX 4UNCA 2VBNB 2VBLB 1VDEA 4Z1ZA 4AQXA 4AQUA 4AABA 4UNAA 3OORA 5E67A 1DFAA 3MXBB 4LQ0A 4UN7A 1T9JA 2VBOA 1DQ3A 4Z20A 3MX9A 4UNBA 5A0WA 2QOJZ 4YHXA 2VS7A 3HYIA 1AF5A 4UN8A 1BP7A 2I3PA 4D6NA 5E5SA 2XE0A 5A74A 2EX5A 4YISA 1G9ZA
chains in the Genus database with same CATH topology
4AAFA 1B24A 5A0MA 4D6OA 1LWSA 2XE0B 4AAEA 1N3EA 1JVAA 4UN9A 3EH8A 5AK9A 4UN7G 3MIPA 3OOLA 2I3QA 4AADA 5AKFA 1U0DA 4EFJA 1G9YA 5A0MB 1UM2A 3C0WA 1M5XA 2VBOB 3QQYA 3HYJA 3UVFA 4YITA 2VS8A 1R7MA 5E63A 4UN8G 5A78A 4LOXA 1LWTA 3MISA 5E5OA 3MXBA 4AAGA 5AKNA 1N3FA 2AB5A 2FLDA 3FD2A 5AKMA 4Z1XA 1P8KZ 1MOWA 2CW7A 2VBJA 1U0CA 2VBNA 3E54A 3KO2A 2VBLA 1T9IA 5A72A 4UN9G 3R7PA 3C0XA 5A77A 3MXAA 2CW8A 1EF0A 4UT0A 2VBJB 2O7MA 2DCHX 4UNCA 2VBNB 2VBLB 1VDEA 4Z1ZA 4AQXA 4AQUA 4AABA 4UNAA 3OORA 5E67A 1DFAA 3MXBB 4LQ0A 4UN7A 1T9JA 2VBOA 1DQ3A 4Z20A 3MX9A 4UNBA 5A0WA 2QOJZ 4YHXA 2VS7A 3HYIA 1AF5A 4UN8A 1BP7A 2I3PA 4D6NA 5E5SA 2XE0A 5A74A 2EX5A 4YISA 1G9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AAF A;  1B24 A;  5A0M A;  4D6O A;  1LWS A;  2XE0 B;  4AAE A;  1N3E A;  1JVA A;  4UN9 A;  3EH8 A;  5AK9 A;  4UN7 G;  3MIP A;  3OOL A;  2I3Q A;  4AAD A;  5AKF A;  1U0D A;  4EFJ A;  1G9Y A;  5A0M B;  1UM2 A;  3C0W A;  1M5X A;  2VBO B;  3QQY A;  3HYJ A;  3UVF A;  4YIT A;  2VS8 A;  1R7M A;  5E63 A;  4UN8 G;  5A78 A;  4LOX A;  1LWT A;  3MIS A;  5E5O A;  3MXB A;  4AAG A;  5AKN A;  1N3F A;  2AB5 A;  2FLD A;  3FD2 A;  5AKM A;  4Z1X A;  1P8K Z;  1MOW A;  2CW7 A;  2VBJ A;  1U0C A;  2VBN A;  3E54 A;  3KO2 A;  2VBL A;  1T9I A;  5A72 A;  4UN9 G;  3R7P A;  3C0X A;  5A77 A;  3MXA A;  2CW8 A;  1EF0 A;  4UT0 A;  2VBJ B;  2O7M A;  2DCH X;  4UNC A;  2VBN B;  2VBL B;  1VDE A;  4Z1Z A;  4AQX A;  4AQU A;  4AAB A;  4UNA A;  3OOR A;  5E67 A;  1DFA A;  3MXB B;  4LQ0 A;  4UN7 A;  1T9J A;  2VBO A;  1DQ3 A;  4Z20 A;  3MX9 A;  4UNB A;  5A0W A;  2QOJ Z;  4YHX A;  2VS7 A;  3HYI A;  1AF5 A;  4UN8 A;  1BP7 A;  2I3P A;  4D6N A;  5E5S A;  2XE0 A;  5A74 A;  2EX5 A;  4YIS A;  1G9Z A; 
#chains in the Genus database with same CATH topology
 4AAF A;  1B24 A;  5A0M A;  4D6O A;  1LWS A;  2XE0 B;  4AAE A;  1N3E A;  1JVA A;  4UN9 A;  3EH8 A;  5AK9 A;  2F4L A;  4UN7 G;  3MIP A;  3OOL A;  2I3Q A;  4AAD A;  5AKF A;  1U0D A;  4EFJ A;  1G9Y A;  5A0M B;  1UM2 A;  3C0W A;  1M5X A;  2VBO B;  3QQY A;  3HYJ A;  3UVF A;  4YIT A;  2VS8 A;  1R7M A;  5E63 A;  4UN8 G;  5A78 A;  4LOX A;  1LWT A;  3MIS A;  5E5O A;  3MXB A;  4AAG A;  5AKN A;  1N3F A;  2AB5 A;  2FLD A;  3FD2 A;  5AKM A;  4Z1X A;  1P8K Z;  1MOW A;  2CW7 A;  2VBJ A;  1U0C A;  2VBN A;  3E54 A;  3KO2 A;  2VBL A;  1T9I A;  5A72 A;  4UN9 G;  3R7P A;  3C0X A;  4KZS A;  5A77 A;  3MXA A;  2CW8 A;  1EF0 A;  4UT0 A;  2VBJ B;  2O7M A;  2DCH X;  4UNC A;  2VBN B;  2VBL B;  1VDE A;  4Z1Z A;  4AQX A;  4AQU A;  4AAB A;  4UNA A;  3OOR A;  5E67 A;  1DFA A;  3MXB B;  4LQ0 A;  4UN7 A;  1T9J A;  2VBO A;  1DQ3 A;  4Z20 A;  3MX9 A;  4UNB A;  5A0W A;  2QOJ Z;  4YHX A;  2VS7 A;  3HYI A;  1AF5 A;  4UN8 A;  1BP7 A;  2I3P A;  4D6N A;  5E5S A;  2XE0 A;  5A74 A;  2EX5 A;  4YIS A;  1G9Z A; 
#chains in the Genus database with same CATH homology
 4AAF A;  1B24 A;  5A0M A;  4D6O A;  1LWS A;  2XE0 B;  4AAE A;  1N3E A;  1JVA A;  4UN9 A;  3EH8 A;  5AK9 A;  4UN7 G;  3MIP A;  3OOL A;  2I3Q A;  4AAD A;  5AKF A;  1U0D A;  4EFJ A;  1G9Y A;  5A0M B;  1UM2 A;  3C0W A;  1M5X A;  2VBO B;  3QQY A;  3HYJ A;  3UVF A;  4YIT A;  2VS8 A;  1R7M A;  5E63 A;  4UN8 G;  5A78 A;  4LOX A;  1LWT A;  3MIS A;  5E5O A;  3MXB A;  4AAG A;  5AKN A;  1N3F A;  2AB5 A;  2FLD A;  3FD2 A;  5AKM A;  4Z1X A;  1P8K Z;  1MOW A;  2CW7 A;  2VBJ A;  1U0C A;  2VBN A;  3E54 A;  3KO2 A;  2VBL A;  1T9I A;  5A72 A;  4UN9 G;  3R7P A;  3C0X A;  5A77 A;  3MXA A;  2CW8 A;  1EF0 A;  4UT0 A;  2VBJ B;  2O7M A;  2DCH X;  4UNC A;  2VBN B;  2VBL B;  1VDE A;  4Z1Z A;  4AQX A;  4AQU A;  4AAB A;  4UNA A;  3OOR A;  5E67 A;  1DFA A;  3MXB B;  4LQ0 A;  4UN7 A;  1T9J A;  2VBO A;  1DQ3 A;  4Z20 A;  3MX9 A;  4UNB A;  5A0W A;  2QOJ Z;  4YHX A;  2VS7 A;  3HYI A;  1AF5 A;  4UN8 A;  1BP7 A;  2I3P A;  4D6N A;  5E5S A;  2XE0 A;  5A74 A;  2EX5 A;  4YIS A;  1G9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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