1OKHA

Viscotoxin a3 from viscum album l.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Toxin
molecule keywords VISCOTOXIN A3
publication title Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
pubmed doi rcsb
total genus 12
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1okhA00
2V9BA 1YV8A 2EYCA 3C8PA 2EYDA 2FD9A 1JMNA 3UE7B 1JMPA 1JXTA 1JXUA 3SZSA 1BHPA 1CCNA 1JXYA 1CCMA 2EYAA 3NIRA 1ORLA 1JXXA 1WUWA 1EJGA 1ED0A 1CNRA 1OKHA 1CRNA 1JXWA 1AB1A 2EYBA 1CBNA 1YVAA 1NBLA 2FD7A 3U7TA 2PLHA 4FC1A 1CXRA
chains in the Genus database with same CATH superfamily
2V9BA 1YV8A 2EYCA 3C8PA 1JNBA 2EYDA 2FD9A 1JMNA 3UE7B 1JMPA 1JXTA 1FOUA 1JXUA 3SZSA 1BHPA 1CCNA 1JXYA 1CCMA 1H5WA 2EYAA 1IJGA 1ORLA 3NIRA 1JXXA 1WUWA 1EJGA 1ED0A 1CNRA 1OKHA 1CRNA 1JXWA 1AB1A 2EYBA 1CBNA 1YVAA 1NBLA 2FD7A 3U7TA 2PLHA 4FC1A 1CXRA
chains in the Genus database with same CATH topology
2V9BA 1YV8A 2EYCA 3C8PA 2EYDA 2FD9A 1JMNA 3UE7B 1JMPA 1JXTA 1JXUA 3SZSA 1BHPA 1CCNA 1JXYA 1CCMA 2EYAA 3NIRA 1ORLA 1JXXA 1WUWA 1EJGA 1ED0A 1CNRA 1OKHA 1CRNA 1JXWA 1AB1A 2EYBA 1CBNA 1YVAA 1NBLA 2FD7A 3U7TA 2PLHA 4FC1A 1CXRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2V9B A;  1YV8 A;  2EYC A;  3C8P A;  2EYD A;  2FD9 A;  1JMN A;  3UE7 B;  1JMP A;  1JXT A;  1JXU A;  3SZS A;  1BHP A;  1CCN A;  1JXY A;  1CCM A;  2EYA A;  3NIR A;  1ORL A;  1JXX A;  1WUW A;  1EJG A;  1ED0 A;  1CNR A;  1OKH A;  1CRN A;  1JXW A;  1AB1 A;  2EYB A;  1CBN A;  1YVA A;  1NBL A;  2FD7 A;  3U7T A;  2PLH A;  4FC1 A;  1CXR A; 
#chains in the Genus database with same CATH topology
 2V9B A;  1YV8 A;  2EYC A;  3C8P A;  1JNB A;  2EYD A;  2FD9 A;  1JMN A;  3UE7 B;  1JMP A;  1JXT A;  1FOU A;  1JXU A;  3SZS A;  1BHP A;  1CCN A;  1JXY A;  1CCM A;  1H5W A;  2EYA A;  1IJG A;  1ORL A;  3NIR A;  1JXX A;  1WUW A;  1EJG A;  1ED0 A;  1CNR A;  1OKH A;  1CRN A;  1JXW A;  1AB1 A;  2EYB A;  1CBN A;  1YVA A;  1NBL A;  2FD7 A;  3U7T A;  2PLH A;  4FC1 A;  1CXR A; 
#chains in the Genus database with same CATH homology
 2V9B A;  1YV8 A;  2EYC A;  3C8P A;  2EYD A;  2FD9 A;  1JMN A;  3UE7 B;  1JMP A;  1JXT A;  1JXU A;  3SZS A;  1BHP A;  1CCN A;  1JXY A;  1CCM A;  2EYA A;  3NIR A;  1ORL A;  1JXX A;  1WUW A;  1EJG A;  1ED0 A;  1CNR A;  1OKH A;  1CRN A;  1JXW A;  1AB1 A;  2EYB A;  1CBN A;  1YVA A;  1NBL A;  2FD7 A;  3U7T A;  2PLH A;  4FC1 A;  1CXR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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